Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 3.6e-252 874.4 423 100.0
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 1.2e-239 832.8 405 99.0
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 3.0e-158 562.4 395 72.2
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 8.5e-137 491.1 406 61.6
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 6.1e-135 485.0 405 62.5
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 1.1e-131 474.2 406 59.6
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 4.1e-131 472.2 404 58.4
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 3.2e-128 462.6 414 59.4
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 1.0e-126 457.6 406 59.1
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 3.0e-126 456.1 407 60.0
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 8.8e-126 454.5 407 58.0
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 6.3e-124 448.4 406 57.4
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 2.6e-122 443.0 405 55.8
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 3.4e-122 442.6 402 56.5
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 2.9e-121 439.5 404 56.7
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 6.5e-121 438.3 407 54.1
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 8.5e-121 438.0 413 56.7
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 4.2e-120 435.6 406 54.4
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 3.0e-118 429.5 423 56.3
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 2.2e-116 423.3 409 55.3
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 4.8e-116 422.2 433 51.3
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 1.1e-115 421.0 408 54.7
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 1.1e-115 421.0 387 54.0
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 4.1e-115 419.1 408 54.2
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 1.2e-114 417.5 402 54.7
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 4.5e-114 415.6 398 54.5
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 5.9e-114 415.2 404 52.7
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 1.3e-113 414.1 406 51.0
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 1.7e-113 413.7 409 54.3
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 2.2e-113 413.3 407 53.1
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 5.0e-113 412.1 406 55.9
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 6.5e-113 411.8 353 58.6
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 3.2e-112 409.5 406 53.7
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 1.2e-111 407.5 376 54.3
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 3.6e-111 406.0 409 52.1
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 4.0e-110 402.5 401 51.6
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 4.4e-109 399.1 405 52.1
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 1.4e-107 394.0 413 51.1
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 4.1e-107 392.5 409 54.8
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 5.9e-106 388.7 413 50.4
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 7.2e-104 381.7 407 50.1
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.5e-101 374.0 403 48.1
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 9.8e-101 371.3 401 49.4
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 6.3e-100 368.6 402 48.8
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 7.0e-99 365.2 382 50.5
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 4.5e-98 362.5 346 53.2
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 1.0e-97 361.3 403 47.1
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 1.0e-97 361.3 433 46.2
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 1.3e-97 360.9 401 47.6
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 6.6e-97 358.6 404 47.5
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 3.4e-93 346.3 481 41.0
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 4.4e-93 345.9 406 44.8
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 6.3e-92 342.0 403 46.9
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 1.4e-91 340.9 349 52.1
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 5.4e-91 339.0 406 44.6
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 5.6e-88 328.9 391 47.3
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 1.3e-84 317.8 410 46.3
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.6e-82 310.8 385 45.5
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 1.6e-82 310.8 403 42.4
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 1.9e-80 303.9 299 51.5
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 7.3e-80 302.0 285 55.8
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 7.5e-69 265.4 291 48.8
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 6.4e-68 262.3 328 44.8
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 5.4e-67 259.2 434 40.3
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 4.6e-66 256.1 429 38.9
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.3e-65 253.8 388 42.5
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 3.0e-65 253.4 406 40.6
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 4.4e-61 239.6 328 43.3
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 1.7e-60 237.7 209 58.4
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 5.6e-56 222.6 220 55.0
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 3.1e-54 216.9 237 50.6
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 1.9e-48 197.6 218 43.6
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 8.7e-41 172.2 324 36.4
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.9e-40 171.0 174 51.7
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 3.0e-33 147.1 135 51.9
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 1.3e-28 131.7 261 33.3
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.6e-26 124.8 150 46.7
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.6e-23 114.8 137 47.4
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 1.3e-12 78.6 194 28.4
Zm00001eb081310 Zea mays HOM05D003443 ORTHO05D009887 1.0e-09 68.9 131 32.1
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 3.0e-09 67.4 59 59.3
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 4.4e-08 63.5 58 55.2
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 7.4e-08 62.8 63 50.8
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 1.8e-06 58.2 45 60.0
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 3.1e-06 57.4 71 38.0


User provided reference genes

Program Settings