Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 3.4e-43 177.9 92 100.0
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 2.6e-38 161.8 90 91.1
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 5.7e-38 160.6 94 90.4
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 1.7e-37 159.1 88 90.9
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 2.2e-37 158.7 94 88.3
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 1.1e-36 156.4 91 87.9
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 1.1e-36 156.4 94 86.2
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 1.4e-36 156.0 94 86.2
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 1.4e-36 156.0 94 88.3
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 3.1e-36 154.8 94 86.2
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 5.3e-36 154.1 93 88.2
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 5.3e-36 154.1 94 85.1
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 5.3e-36 154.1 83 94.0
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 9.1e-36 153.3 94 86.2
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 1.2e-35 152.9 95 87.4
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 1.6e-35 152.5 90 88.9
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 1.6e-35 152.5 94 87.2
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 4.5e-35 151.0 94 85.1
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 4.5e-35 151.0 94 85.1
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 5.9e-35 150.6 94 81.9
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 7.7e-35 150.2 94 86.2
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.0e-34 149.8 87 87.4
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.0e-34 149.8 87 87.4
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 1.3e-34 149.4 93 82.8
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 1.3e-34 149.4 93 87.1
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 1.7e-34 149.1 94 85.1
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 1.7e-34 149.1 93 86.0
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 1.7e-34 149.1 87 85.1
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 2.9e-34 148.3 86 88.4
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 2.9e-34 148.3 89 86.5
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 2.9e-34 148.3 87 86.2
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 2.9e-34 148.3 94 81.9
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 3.8e-34 147.9 94 81.9
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 6.5e-34 147.1 94 84.0
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 6.5e-34 147.1 83 90.4
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 6.5e-34 147.1 94 84.0
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 6.5e-34 147.1 93 82.8
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 8.5e-34 146.7 88 88.6
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 8.5e-34 146.7 96 83.3
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 1.5e-33 146.0 82 90.2
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.5e-33 146.0 86 87.2
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 1.5e-33 146.0 92 83.7
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 1.5e-33 146.0 92 83.7
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 2.5e-33 145.2 95 81.1
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 2.5e-33 145.2 92 82.6
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 2.5e-33 145.2 94 79.8
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 3.2e-33 144.8 90 84.4
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 7.2e-33 143.7 78 91.0
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 7.2e-33 143.7 94 78.7
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 9.4e-33 143.3 94 83.0
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 9.4e-33 143.3 85 85.9
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 2.1e-32 142.1 89 82.0
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 2.7e-32 141.7 92 82.6
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 2.7e-32 141.7 86 90.7
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 3.6e-32 141.4 93 78.5
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 4.7e-32 141.0 84 83.3
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 6.1e-32 140.6 92 81.5
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 8.0e-32 140.2 77 94.8
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 1.4e-31 139.4 93 80.6
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 1.4e-31 139.4 86 84.9
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 1.8e-31 139.0 79 84.8
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 1.8e-31 139.0 88 80.7
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 3.0e-31 138.3 89 78.7
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 3.0e-31 138.3 94 77.7
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 4.0e-31 137.9 100 77.0
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 5.2e-31 137.5 107 72.9
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 6.7e-31 137.1 109 71.6
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 6.7e-31 137.1 92 73.9
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 8.8e-31 136.7 94 79.8
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 1.5e-30 136.0 77 81.8
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 1.5e-30 136.0 86 81.4
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 2.6e-30 135.2 94 78.7
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 7.5e-30 133.7 92 78.3
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 7.5e-30 133.7 87 81.6
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 9.7e-30 133.3 86 74.4
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 9.7e-30 133.3 87 75.9
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 1.7e-29 132.5 86 79.1
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 1.7e-29 132.5 77 83.1
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 1.7e-29 132.5 113 66.4
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 2.2e-29 132.1 78 88.5
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 2.8e-29 131.7 74 87.8
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 3.7e-29 131.3 92 78.3
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.1e-28 129.8 113 64.6
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 1.4e-28 129.4 86 73.3
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 1.4e-28 129.4 86 73.3
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 1.4e-28 129.4 83 77.1
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 1.8e-28 129.0 84 78.6
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 1.8e-28 129.0 86 73.3
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 1.8e-28 129.0 86 73.3
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 1.8e-28 129.0 86 73.3
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 1.8e-28 129.0 86 73.3
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 3.1e-28 128.3 87 74.7
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 3.1e-28 128.3 91 71.4
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 7.0e-28 127.1 90 71.1
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 7.0e-28 127.1 90 71.1
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 7.0e-28 127.1 90 71.1
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 1.2e-27 126.3 86 75.6
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 1.2e-27 126.3 75 88.0
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 2.0e-27 125.6 82 75.6
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 2.7e-27 125.2 75 78.7
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 2.7e-27 125.2 75 78.7
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 2.7e-27 125.2 75 78.7
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 2.7e-27 125.2 93 69.9
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 4.5e-27 124.4 82 73.2
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 4.5e-27 124.4 81 84.0
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 7.7e-27 123.6 83 81.9
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 7.7e-27 123.6 81 76.5
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 7.7e-27 123.6 72 79.2
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 1.3e-26 122.9 79 83.5
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 1.7e-26 122.5 75 77.3
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 2.9e-26 121.7 91 68.1
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 3.8e-26 121.3 80 77.5
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 8.5e-26 120.2 69 81.2
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 2.5e-25 118.6 80 76.2
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 6.1e-24 114.0 62 85.5
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 8.0e-24 113.6 64 85.9
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 8.0e-24 113.6 77 75.3
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 2.3e-23 112.1 90 70.0
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 6.3e-21 104.0 76 73.7
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 9.1e-20 100.1 89 58.4
Zm00001eb102630 Zea mays HOM05D005828 ORTHO05D006822 2.0e-19 99.0 85 63.5
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 6.1e-16 87.4 67 76.1
MD03G1196900 Malus domestica HOM05D005828 ORTHO05D006822 8.8e-15 83.6 59 72.9
Pp3c4_22520 Physcomitrium patens HOM05D005828 ORTHO05D006822 2.0e-14 82.4 65 58.5
Lalb_Chr17g0343871 Lupinus albus HOM05D005828 ORTHO05D006822 9.8e-14 80.1 47 85.1
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 9.8e-14 80.1 85 50.6
SMO232G0111 Selaginella moellendorffii HOM05D005828 ORTHO05D006822 1.3e-10 69.7 60 56.7
AagrBONN_evm.TU.Sc2ySwM_368.871 Anthoceros agrestis HOM05D005828 ORTHO05D006822 2.9e-10 68.6 61 59.0
BcaB03g11887 Brassica carinata HOM05D005828 ORTHO05D006822 3.6e-08 61.6 48 62.5
BcaNung06341 Brassica carinata HOM05D005828 ORTHO05D006822 3.6e-08 61.6 48 62.5
BcaNung06770 Brassica carinata HOM05D005828 ORTHO05D006822 3.6e-08 61.6 48 62.5


User provided reference genes

Program Settings