Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 1.1e-261 906.0 436 100.0
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 2.5e-240 835.1 405 99.0
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 4.3e-176 621.7 426 73.5
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 1.1e-152 543.9 435 63.0
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 1.6e-151 540.0 436 64.0
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 1.2e-149 533.9 437 61.6
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 6.0e-146 521.5 433 59.4
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 3.0e-145 519.2 445 61.1
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 6.2e-143 511.5 438 61.4
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 1.3e-140 503.8 431 60.8
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 4.2e-139 498.8 431 58.2
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 3.5e-138 495.7 435 58.2
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 3.5e-138 495.7 438 59.1
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 7.9e-138 494.6 444 58.6
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 1.3e-137 493.8 434 57.1
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 1.8e-137 493.4 435 56.8
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 1.8e-137 493.4 438 55.9
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 2.5e-136 489.6 437 58.6
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 2.4e-134 483.0 440 57.5
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 6.9e-134 481.5 454 57.5
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 9.0e-134 481.1 439 56.9
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 6.5e-132 474.9 464 52.8
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 1.1e-131 474.2 437 56.5
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 1.1e-131 474.2 431 56.8
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 4.6e-130 468.8 437 58.1
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 6.1e-130 468.4 436 56.7
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 1.8e-129 466.8 437 52.9
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 2.3e-129 466.5 435 54.3
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 3.9e-129 465.7 438 54.8
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 6.7e-129 464.9 437 56.1
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 6.7e-129 464.9 440 54.3
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 3.7e-127 459.1 437 53.5
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 1.0e-124 451.1 436 53.9
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 1.4e-123 447.2 444 52.9
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 6.1e-122 441.8 444 52.3
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 6.7e-121 438.3 438 55.9
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 6.5e-116 421.8 435 51.3
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 4.2e-115 419.1 398 55.0
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 2.1e-114 416.8 432 50.0
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 2.7e-114 416.4 433 50.1
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.4e-113 414.1 432 49.5
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 2.3e-113 413.3 353 58.6
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 3.0e-113 412.9 435 49.7
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 1.1e-112 411.0 436 50.0
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 3.3e-112 409.5 376 54.3
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 2.8e-111 406.4 432 49.1
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 6.3e-111 405.2 401 51.6
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 9.1e-110 401.4 462 47.6
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 5.0e-108 395.6 437 46.5
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 1.1e-107 394.4 432 49.5
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 9.4e-107 391.3 380 53.9
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 4.7e-106 389.0 437 46.2
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 3.9e-105 386.0 510 42.2
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 9.4e-99 364.8 346 53.2
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 2.1e-98 363.6 382 50.0
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 8.8e-97 358.2 434 44.2
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 4.4e-96 355.9 437 47.6
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.1e-94 351.3 314 57.6
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 7.0e-94 348.6 328 53.4
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.2e-88 331.3 391 47.3
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 4.2e-83 312.8 379 45.9
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 2.8e-82 310.1 460 41.5
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 5.2e-81 305.8 437 43.0
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 2.6e-80 303.5 465 41.9
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 6.3e-79 298.9 442 43.0
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 6.3e-79 298.9 448 40.4
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 7.0e-70 268.9 291 49.1
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.5e-67 261.2 270 51.9
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 2.1e-61 240.7 209 58.9
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 3.5e-61 240.0 328 43.3
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 8.9e-57 225.3 220 55.5
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 2.0e-56 224.2 264 42.4
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 3.7e-55 219.9 203 54.7
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 4.4e-48 196.4 166 55.4
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 9.0e-41 172.2 324 36.1
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 4.6e-29 133.3 261 33.3
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 5.6e-27 126.3 150 46.7
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 6.9e-25 119.4 90 64.4
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.0e-23 115.5 137 47.4
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 2.7e-21 107.5 88 61.4
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 8.7e-20 102.4 87 58.6
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 6.1e-13 79.7 194 28.4
Hma1.2p1_0248F.1_g102080 Hydrangea macrophylla HOM05D003443 ORTHO05D009887 2.4e-09 67.8 34 85.3
Zm00001eb081310 Zea mays HOM05D003443 ORTHO05D009887 3.1e-09 67.4 131 31.3
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 3.8e-07 60.5 47 59.6
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 3.2e-06 57.4 71 38.0


User provided reference genes

Program Settings