Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 0.0e+00 2449.5 1243 100.0
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 0.0e+00 1650.6 1248 69.8
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 0.0e+00 1604.7 1352 64.9
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 0.0e+00 1443.7 1129 68.0
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 0.0e+00 1098.2 1269 53.2
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 1.6e-308 1063.1 1280 49.4
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 4.9e-302 1041.6 1253 49.6
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 3.1e-296 1022.3 1256 49.5
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 5.8e-295 1018.1 1196 49.9
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 1.3e-294 1016.9 1377 46.6
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 1.7e-294 1016.5 1218 49.1
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 2.2e-294 1016.1 1158 51.6
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 5.9e-287 991.5 1272 48.3
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 8.5e-286 987.6 1288 48.9
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 6.1e-284 981.5 1275 47.6
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 3.1e-280 969.1 1275 47.1
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 2.5e-277 959.5 1273 47.0
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 2.1e-276 956.4 1344 45.5
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 1.4e-267 927.2 1272 46.5
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 5.2e-267 925.2 1361 44.2
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 5.7e-266 921.8 1269 46.4
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 7.4e-266 921.4 1278 46.4
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.2e-263 914.1 1278 46.1
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 7.2e-261 904.8 961 54.7
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.3e-257 894.0 1293 45.0
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 4.5e-255 885.6 1268 45.6
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 2.9e-254 882.9 1242 45.2
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 1.2e-252 877.5 1138 47.0
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 4.8e-249 865.5 1164 46.1
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 8.3e-249 864.8 1319 42.8
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 2.4e-248 863.2 1239 45.8
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 4.5e-247 859.0 1059 49.7
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 1.7e-246 857.1 1263 45.7
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 3.6e-244 849.4 1207 45.2
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 8.9e-243 844.7 1283 43.3
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 5.7e-242 842.0 1194 45.7
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 2.8e-241 839.7 1274 44.7
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 4.1e-240 835.9 1288 42.7
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 1.6e-239 833.9 1269 45.0
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 5.9e-239 832.0 1286 43.9
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 1.0e-238 831.2 1268 44.4
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 8.0e-236 821.6 1269 43.1
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 6.8e-235 818.5 1237 43.9
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 3.9e-230 802.7 1290 42.9
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 1.6e-228 797.3 1202 42.7
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 8.0e-228 795.0 1179 41.7
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 6.8e-227 792.0 1272 43.6
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.2e-226 791.2 1183 43.5
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 1.5e-226 790.8 1266 43.1
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 7.5e-226 788.5 1166 43.5
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 7.3e-221 771.9 1240 42.5
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 8.3e-217 758.4 1152 43.5
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 2.7e-215 753.4 1159 41.2
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 1.7e-214 750.7 1240 41.5
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 8.6e-214 748.4 1290 40.5
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 7.3e-213 745.3 1208 41.7
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 9.5e-213 745.0 1211 40.0
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 6.8e-211 738.8 1204 39.7
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 2.9e-209 733.4 1185 40.3
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 3.8e-209 733.0 1255 39.4
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 2.7e-207 726.9 1217 40.4
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 1.9e-205 720.7 1209 40.9
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 3.3e-205 719.9 1160 42.2
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 1.1e-203 714.9 1144 41.8
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 2.6e-202 710.3 1207 41.3
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 9.9e-202 708.4 1217 39.0
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 1.6e-199 701.0 1475 35.5
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 2.1e-199 700.7 1313 39.8
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 7.8e-199 698.7 1174 38.8
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 6.6e-198 695.7 1241 37.7
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 7.3e-197 692.2 1175 38.8
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 2.8e-196 690.3 1188 38.6
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 1.4e-195 688.0 1275 40.5
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 2.2e-193 680.6 1206 38.6
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 4.9e-193 679.5 1324 39.0
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 6.7e-190 669.1 1187 38.6
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 6.2e-188 662.5 1256 40.8
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 2.1e-183 647.5 1604 33.5
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 1.8e-182 644.4 1500 34.1
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 2.5e-181 640.6 1320 35.0
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 4.3e-181 639.8 1283 37.6
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 2.8e-180 637.1 1231 37.0
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.2e-178 631.7 783 48.9
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 3.2e-176 623.6 1251 36.5
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 7.1e-176 622.5 1250 36.7
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 3.5e-175 620.2 1275 37.0
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 7.9e-175 619.0 1267 38.4
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 5.1e-174 616.3 1257 36.4
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 1.9e-173 614.4 1259 36.5
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 4.3e-173 613.2 1525 33.0
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 7.7e-170 602.4 1242 36.9
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 3.2e-168 597.0 1546 32.5
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 5.5e-168 596.3 1251 36.6
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 1.0e-166 592.0 1213 37.1
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 1.0e-166 592.0 1215 36.9
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 5.7e-165 586.3 1231 35.8
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 5.7e-165 586.3 1223 35.6
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 1.3e-164 585.1 1228 35.8
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 5.9e-162 576.2 1222 35.2
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 1.0e-161 575.5 1572 32.1
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 1.1e-152 545.4 1085 36.6
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 1.4e-150 538.5 739 44.8
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 1.8e-147 528.1 1293 34.1
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 2.0e-146 524.6 1179 34.1
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.4e-142 511.9 1039 36.6
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 5.5e-136 490.0 975 36.3
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 1.5e-133 481.9 1230 33.7
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 8.3e-132 476.1 1185 32.3
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 8.9e-126 456.1 544 49.8
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 2.0e-125 454.9 420 56.9
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 3.9e-113 414.1 674 42.3
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 5.0e-113 413.7 1165 30.2
FAN27G0677 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.9e-108 397.9 600 43.2
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 1.0e-105 389.4 1178 27.9
Eucgr.F03782 Eucalyptus grandis HOM05D004094 ORTHO05D004601 6.6e-97 360.1 569 42.4
COL.COLO4_35940 Corchorus olitorius HOM05D004094 ORTHO05D004601 2.4e-75 288.5 468 42.7
TWI36G0382 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.3e-73 282.7 514 41.4
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 3.0e-73 281.6 385 46.8
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 6.9e-70 270.4 562 34.9
TWI36G0013 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 8.4e-68 263.5 399 42.4
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 2.3e-65 255.4 912 29.3
Lj7A339G40 Lonicera japonica HOM05D004094 ORTHO05D004601 2.1e-63 248.8 413 43.1
VMungo0647G0510 Vigna mungo HOM05D004094 ORTHO05D004601 3.7e-63 248.1 564 35.1
Actinidia23072 Actinidia chinensis HOM05D004094 ORTHO05D004601 1.9e-59 235.7 408 38.0
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 3.9e-57 228.0 1010 25.3
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 2.8e-55 221.9 596 29.5
Dinv27324 Davidia involucrata HOM05D004094 ORTHO05D004601 2.8e-55 221.9 218 57.3
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 6.3e-55 220.7 786 27.1
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 2.2e-52 212.2 293 42.0
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 1.2e-50 206.5 475 32.4
VMungo1383G1238 Vigna mungo HOM05D004094 ORTHO05D004601 3.0e-49 201.8 431 38.3
MBI03_g47843_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 5.1e-49 201.1 339 39.2
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 4.3e-48 198.0 598 28.6
CDE06G0603 Ceratophyllum demersum HOM05D001730 ORTHO05D005730 7.4e-48 197.2 608 30.3
PGSC0003DMG400017557 Solanum tuberosum HOM05D004094 ORTHO05D004601 1.3e-47 196.4 274 40.9
Actinidia02614 Actinidia chinensis HOM05D004094 ORTHO05D004601 4.8e-47 194.5 277 44.0
GSVIVG01008881001 Vitis vinifera HOM05D004094 ORTHO05D004601 1.0e-44 186.8 389 34.2
Duzib093G1173 Durio zibethinus HOM05D004094 ORTHO05D004601 6.3e-39 167.5 169 54.4
SHI23041 Sapria himalayana HOM05D004094 ORTHO05D004601 1.7e-31 142.9 449 32.5
Lj7A339T40 Lonicera japonica HOM05D004094 ORTHO05D004601 1.1e-30 140.2 148 50.0
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 2.2e-28 132.5 549 24.6
SEGI_20546 Sequoiadendron giganteum HOM05D004094 ORTHO05D004601 1.5e-27 129.8 328 30.2
BraA02t07168Z Brassica rapa HOM05D004094 ORTHO05D004601 6.1e-26 124.4 150 46.0
BolC2t09506H Brassica oleracea HOM05D004094 ORTHO05D004601 1.4e-25 123.2 464 29.7
BolC2t09507H Brassica oleracea HOM05D004094 ORTHO05D004601 5.4e-22 111.3 147 42.2
Cfa014854 Carpinus fangiana HOM05D000997 ORTHO05D004601 1.0e-20 107.1 68 79.4
Cfa023858 Carpinus fangiana HOM05D004094 ORTHO05D004601 5.5e-19 101.3 390 24.6
Cfa008660 Carpinus fangiana HOM05D004094 ORTHO05D004601 9.4e-19 100.5 51 84.3
TWI77G0135 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 2.7e-18 99.0 108 49.1
Cfa003011 Carpinus fangiana HOM05D004094 ORTHO05D004601 3.6e-18 98.6 51 82.4
TPR.G11472 Trifolium pratense HOM05D004094 ORTHO05D004601 1.4e-17 96.7 106 49.1
MBI03_g47842_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 1.8e-14 86.3 108 50.0
MCO09G770 Micromonas commoda HOM05D004094 ORTHO05D004601 2.4e-14 85.9 238 31.5
SHI23040 Sapria himalayana HOM05D004094 ORTHO05D004601 7.0e-14 84.3 173 38.7
Lj7A339G41 Lonicera japonica HOM05D004094 ORTHO05D004601 1.7e-12 79.7 86 53.5
TPR.G23323 Trifolium pratense HOM05D004094 ORTHO05D004601 5.0e-12 78.2 70 50.0
FAN15G1439 Fragaria x ananassa HOM05D004094 ORTHO05D004601 8.0e-10 70.9 62 56.5
FAN27G0079 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.4e-09 70.1 66 53.0
TPR.G3495 Trifolium pratense HOM05D004094 ORTHO05D004601 1.4e-09 70.1 63 52.4
Actinidia02612 Actinidia chinensis HOM05D004967 ORTHO05D004601 2.3e-09 69.3 94 38.3
FAN20G0769 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.7e-07 63.2 55 56.4
SHI23045 Sapria himalayana HOM05D004094 ORTHO05D004601 1.4e-06 60.1 43 55.8
VMungo1127G0498 Vigna mungo HOM05D001535 ORTHO05D004601 5.4e-06 58.2 44 63.6


User provided reference genes

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