Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 2.5e-54 215.3 116 100.0
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 8.5e-39 163.7 116 71.6
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 1.8e-36 156.0 117 71.8
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 3.0e-36 155.2 117 71.8
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 8.2e-34 147.1 116 64.7
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 1.4e-33 146.4 116 68.1
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 1.8e-33 146.0 117 64.1
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 4.1e-33 144.8 118 67.8
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 4.1e-33 144.8 116 65.5
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 5.3e-33 144.4 118 66.9
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 1.2e-32 143.3 115 66.1
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 2.0e-32 142.5 116 64.7
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 1.0e-31 140.2 120 59.2
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 1.0e-31 140.2 117 65.0
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 1.3e-31 139.8 116 62.1
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 4.2e-30 134.8 119 60.5
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 7.2e-30 134.0 116 62.9
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 2.1e-29 132.5 118 61.0
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 2.7e-29 132.1 121 62.0
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 1.0e-28 130.2 118 60.2
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 1.4e-28 129.8 116 61.2
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 1.8e-28 129.4 118 59.3
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 2.3e-28 129.0 119 55.5
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 3.0e-28 128.6 115 61.7
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 5.2e-28 127.9 119 62.2
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 5.2e-28 127.9 117 56.4
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 5.2e-28 127.9 115 60.9
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 6.7e-28 127.5 117 56.4
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 1.1e-27 126.7 120 59.2
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.5e-27 126.3 104 64.4
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 1.5e-27 126.3 116 60.3
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 1.5e-27 126.3 116 60.3
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 2.0e-27 125.9 113 60.2
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 5.7e-27 124.4 116 58.6
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 5.7e-27 124.4 118 57.6
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 9.7e-27 123.6 116 58.6
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 1.7e-26 122.9 118 58.5
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 2.2e-26 122.5 98 60.2
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 2.8e-26 122.1 114 58.8
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 3.7e-26 121.7 117 59.8
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 4.8e-26 121.3 116 55.2
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 8.2e-26 120.6 118 56.8
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 8.2e-26 120.6 105 58.1
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 1.1e-25 120.2 119 56.3
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 4.1e-25 118.2 117 55.6
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 4.1e-25 118.2 113 55.8
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 9.1e-25 117.1 119 53.8
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 9.1e-25 117.1 102 60.8
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 2.6e-24 115.5 120 55.0
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 3.5e-24 115.2 119 51.3
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 7.7e-24 114.0 100 58.0
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 1.7e-23 112.8 119 51.3
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 2.2e-23 112.5 117 51.3
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 2.2e-23 112.5 96 58.3
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 2.2e-23 112.5 119 51.3
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 8.5e-23 110.5 118 53.4
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 1.1e-22 110.2 110 55.5
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 2.5e-22 109.0 117 54.7
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 2.5e-22 109.0 117 54.7
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 4.2e-22 108.2 117 53.8
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 9.4e-22 107.1 121 51.2
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 9.4e-22 107.1 103 57.3
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 1.2e-21 106.7 117 53.0
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 3.6e-21 105.1 93 62.4
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 3.6e-21 105.1 118 51.7
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 4.7e-21 104.8 118 51.7
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 6.1e-21 104.4 117 53.0
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 2.3e-20 102.4 116 52.6
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 2.3e-20 102.4 116 52.6
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 2.3e-20 102.4 97 56.7
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 4.0e-20 101.7 117 52.1
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 5.2e-20 101.3 126 46.8
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 5.2e-20 101.3 116 52.6
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 6.8e-20 100.9 117 52.1
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 8.8e-20 100.5 122 46.7
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 1.5e-19 99.8 117 45.3
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 1.5e-19 99.8 122 46.7
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 3.4e-19 98.6 119 49.6
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 5.7e-19 97.8 116 50.0
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 1.3e-18 96.7 103 51.5
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 2.2e-18 95.9 107 52.3
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 2.2e-18 95.9 95 52.6
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 2.2e-18 95.9 113 52.2
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 4.8e-18 94.7 115 47.8
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 4.8e-18 94.7 115 47.8
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 4.8e-18 94.7 96 53.1
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 8.3e-18 94.0 96 52.1
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.8e-17 92.8 96 52.1
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.8e-17 92.8 96 52.1
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 2.4e-17 92.4 118 48.3
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 3.1e-17 92.0 115 47.8
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 2.0e-16 89.4 118 44.9
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 3.5e-16 88.6 103 51.5
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 2.9e-15 85.5 76 60.5
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 1.2e-13 80.1 115 45.2
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 2.3e-12 75.9 75 54.7
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 3.0e-12 75.5 96 42.7
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 5.2e-12 74.7 110 43.6
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 9.8e-11 70.5 63 58.7
Os06g0149500 Oryza sativa ssp. japonica HOM05D007246 ORTHO05D009066 9.8e-11 70.5 105 39.0
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 8.3e-10 67.4 105 43.8
Peaxi162Scf17552g00001 Petunia axillaris HOM05D007246 ORTHO05D009066 1.1e-09 67.0 63 61.9
HPP92_002815 Vanilla planifolia HOM05D007246 ORTHO05D009066 5.4e-09 64.7 66 50.0
Lsat_1_v5_gn_4_16480 Lactuca sativa HOM05D007246 ORTHO05D009066 7.7e-08 60.8 38 68.4
SEGI_11751 Sequoiadendron giganteum HOM05D007246 ORTHO05D009066 1.0e-07 60.5 99 36.4
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 2.9e-07 58.9 74 44.6
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 2.9e-07 58.9 74 44.6
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 7.2e-06 54.3 93 39.8
arahy.Tifrunner.gnm1.ann1.65RZ9M Arachis hypogaea HOM05D007246 ORTHO05D009066 9.5e-06 53.9 69 46.4


User provided reference genes

Program Settings