Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 5.7e-234 813.9 427 100.0
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 2.1e-212 742.3 430 86.3
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 3.6e-212 741.5 430 86.5
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 5.6e-205 717.6 430 83.7
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.2e-201 705.7 430 84.4
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.7e-198 696.0 430 85.3
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.5e-197 693.0 432 86.8
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 7.3e-197 690.6 446 78.9
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 7.3e-197 690.6 431 82.6
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 4.8e-196 688.0 430 82.6
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 4.8e-196 688.0 430 82.6
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 8.1e-196 687.2 430 81.4
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 8.1e-196 687.2 431 85.4
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.1e-195 686.8 430 82.3
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 2.4e-195 685.6 418 86.1
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 3.1e-195 685.3 430 80.7
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 4.0e-195 684.9 430 84.7
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 5.3e-195 684.5 429 81.8
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 6.9e-195 684.1 433 82.0
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 2.0e-194 682.6 429 84.6
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.0e-194 682.6 430 81.9
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 7.6e-194 680.6 432 85.2
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 3.8e-193 678.3 430 82.3
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 2.4e-192 675.6 430 80.9
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 4.2e-192 674.9 428 83.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 5.4e-192 674.5 434 83.2
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.6e-191 672.9 436 79.8
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.7e-191 672.2 419 80.9
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 4.6e-191 671.4 429 84.8
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 6.0e-191 671.0 408 83.3
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 1.0e-190 670.2 391 89.5
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.3e-190 669.8 430 83.0
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.8e-190 669.5 419 83.1
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 3.0e-190 668.7 419 80.7
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.9e-190 668.3 430 80.0
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 5.1e-190 667.9 454 81.1
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 5.1e-190 667.9 437 82.2
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.9e-189 666.0 432 79.2
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.5e-189 665.6 419 82.1
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 2.5e-189 665.6 428 81.8
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 3.3e-189 665.2 431 80.7
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.3e-189 664.8 430 80.9
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 7.4e-189 664.1 427 81.0
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 2.1e-188 662.5 427 81.0
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.1e-187 660.2 455 76.7
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 3.1e-187 658.7 434 82.5
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 4.0e-187 658.3 428 80.4
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 1.2e-186 656.8 430 80.5
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.0e-186 656.0 441 81.0
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 2.6e-186 655.6 425 79.5
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 3.4e-186 655.2 434 79.0
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 4.5e-186 654.8 383 84.6
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 4.5e-186 654.8 413 82.1
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 4.5e-186 654.8 413 79.9
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 5.8e-186 654.4 413 79.9
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 7.6e-186 654.1 371 88.9
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 7.6e-186 654.1 437 76.0
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.7e-185 652.9 434 78.8
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 4.9e-185 651.4 427 79.9
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 4.9e-185 651.4 409 82.2
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.2e-184 648.7 401 80.3
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 4.2e-184 648.3 413 81.4
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 9.3e-184 647.1 430 78.4
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 9.3e-184 647.1 430 77.7
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 9.3e-184 647.1 430 77.7
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 9.3e-184 647.1 438 78.5
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 1.2e-183 646.7 410 79.0
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 2.7e-183 645.6 434 81.1
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 3.5e-183 645.2 430 77.4
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.0e-182 643.7 391 84.1
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.3e-182 643.3 438 78.5
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.8e-182 642.9 427 77.3
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 1.8e-182 642.9 430 82.8
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 3.0e-182 642.1 430 79.1
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 3.9e-182 641.7 432 78.2
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 6.7e-182 641.0 429 81.4
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 6.7e-182 641.0 429 82.1
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.3e-181 638.3 427 81.0
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 5.6e-181 637.9 427 80.8
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 7.4e-181 637.5 427 81.3
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.3e-180 636.7 426 80.8
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.3e-180 636.7 426 80.8
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.3e-180 636.7 416 77.4
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 4.8e-180 634.8 395 83.8
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 1.1e-179 633.6 433 80.6
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 1.8e-179 632.9 427 78.5
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 4.0e-179 631.7 405 79.3
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 5.3e-179 631.3 427 80.3
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.5e-176 622.5 431 73.5
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 7.1e-176 620.9 427 78.5
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 6.0e-175 617.8 408 82.4
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.9e-174 615.1 411 81.5
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.9e-174 615.1 411 81.5
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.9e-173 612.8 401 82.0
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 1.8e-171 606.3 439 77.2
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 1.8e-171 606.3 439 77.2
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 1.8e-171 606.3 327 89.9
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.3e-169 600.1 327 89.0
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 3.2e-168 595.5 426 72.8
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 4.2e-168 595.1 386 77.7
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.2e-167 593.6 407 74.4
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 3.7e-164 582.0 419 74.9
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 2.4e-163 579.3 381 81.9
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 4.1e-163 578.6 377 77.5
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.5e-162 576.6 431 73.1
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 2.0e-162 576.2 415 71.8
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.0e-161 573.9 314 87.6
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.3e-161 573.5 409 70.4
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 2.2e-161 572.8 360 76.9
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 1.4e-158 563.5 436 67.0
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 6.3e-156 554.7 360 74.4
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 8.2e-156 554.3 360 75.8
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.1e-155 553.9 360 74.2
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 3.8e-145 518.8 370 75.1
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 4.7e-143 511.9 282 88.3
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.6e-141 506.1 316 78.2
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 4.8e-140 501.9 350 79.7
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 3.1e-139 499.2 311 78.8
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.5e-136 490.3 440 60.5
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.6e-135 486.9 325 73.8
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 8.0e-135 484.6 327 73.1
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 2.3e-134 483.0 327 72.8
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 4.0e-134 482.3 327 73.1
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 1.3e-132 477.2 325 72.9
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 1.3e-132 477.2 325 72.9
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 1.3e-132 477.2 325 72.9
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.2e-132 476.5 327 72.8
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 2.8e-132 476.1 327 72.8
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 1.8e-131 473.4 327 72.2
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 4.1e-131 472.2 327 72.8
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 7.0e-131 471.5 457 62.4
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 4.2e-128 462.2 332 73.5
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 3.8e-121 439.1 303 75.6
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 1.2e-117 427.6 330 63.0
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.5e-117 427.2 351 66.4
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 1.2e-114 417.5 335 60.6
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 6.0e-114 415.2 312 65.7
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 3.0e-113 412.9 321 69.2
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.6e-109 399.8 282 70.2
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 5.6e-104 382.1 224 84.4
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 4.4e-85 319.3 228 75.0
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.6e-74 284.3 192 75.5
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.5e-72 276.9 234 62.8
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 6.0e-66 255.8 159 77.4
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 3.2e-59 233.4 276 46.7
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.5e-58 229.9 288 49.7
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 3.0e-57 226.9 187 63.1
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 2.8e-55 220.3 187 62.0
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 2.4e-54 217.2 123 81.3
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 5.5e-51 206.1 311 39.2
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 3.7e-47 193.4 183 55.7
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 4.8e-47 193.0 173 58.4
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.4e-46 190.7 100 93.0
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.0e-44 185.3 148 66.2
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 1.3e-44 184.9 177 63.3
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 1.9e-43 181.0 101 82.2
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 1.8e-41 174.5 101 79.2
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-40 170.6 183 52.5
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 7.4e-40 169.1 104 77.9
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 7.0e-38 162.5 100 76.0
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 9.4e-35 152.1 213 40.8
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 3.6e-34 150.2 77 87.0
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.7e-34 149.8 135 62.2
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 6.7e-33 146.0 122 63.1
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 5.7e-32 142.9 76 84.2
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.6e-29 134.0 72 93.1
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.7e-23 113.6 74 77.0
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 1.5e-19 101.7 187 38.5
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 5.5e-19 99.8 106 51.9
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 1.7e-12 78.2 49 77.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.1e-11 75.5 50 70.0
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 2.8e-10 70.9 77 54.5
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 2.8e-10 70.9 77 54.5
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.8e-09 68.2 36 91.7
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.3e-09 67.8 73 52.1
ECA233G3734 Erigeron canadensis HOM05D005443 ORTHO05D009021 8.9e-09 65.9 83 50.6
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 1.1e-06 58.9 45 64.4


User provided reference genes

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