Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.4e-139 499.6 248 100.0
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.7e-137 492.7 248 98.4
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 5.0e-137 491.1 248 98.0
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.4e-128 463.0 246 92.3
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 5.5e-128 461.1 248 91.9
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 7.2e-128 460.7 246 92.7
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 7.2e-128 460.7 246 92.7
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.1e-127 459.1 244 93.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 2.7e-127 458.8 246 91.1
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 2.3e-126 455.7 244 91.4
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 3.0e-126 455.3 246 90.2
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 5.1e-126 454.5 246 90.7
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 6.7e-126 454.1 250 90.8
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 6.7e-126 454.1 244 92.6
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 8.8e-126 453.8 240 91.7
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 8.8e-126 453.8 246 90.7
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.0e-125 452.6 250 90.0
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 2.6e-125 452.2 250 89.6
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.6e-125 452.2 250 89.6
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 4.4e-125 451.4 244 92.2
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 4.4e-125 451.4 250 89.6
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 5.7e-125 451.1 249 90.0
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 7.4e-125 450.7 244 91.8
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 9.7e-125 450.3 246 90.2
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 9.7e-125 450.3 247 90.3
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 9.7e-125 450.3 247 90.3
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 2.2e-124 449.1 244 89.3
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 2.8e-124 448.7 246 89.8
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.8e-124 448.7 246 90.2
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 3.7e-124 448.4 244 90.2
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 6.3e-124 447.6 248 89.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 6.3e-124 447.6 248 89.9
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 8.2e-124 447.2 247 89.1
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 8.2e-124 447.2 246 89.0
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.1e-123 446.8 244 88.9
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.1e-123 446.8 247 88.7
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.8e-123 446.0 246 89.8
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.8e-123 446.0 244 89.8
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.8e-123 446.0 248 89.5
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.1e-123 444.9 258 86.8
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 9.1e-123 443.7 246 88.6
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.5e-122 443.0 247 88.3
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.5e-122 443.0 244 88.1
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 3.4e-122 441.8 246 89.0
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 3.4e-122 441.8 244 89.3
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 3.4e-122 441.8 247 87.9
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 3.4e-122 441.8 248 88.7
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 5.9e-122 441.0 244 90.2
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 7.7e-122 440.7 250 86.8
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.0e-121 440.3 244 87.7
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.0e-121 440.3 250 86.8
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.3e-121 439.9 250 86.8
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.7e-121 439.5 250 86.4
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.2e-121 439.1 233 92.3
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.9e-121 438.7 246 86.6
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 5.0e-121 438.0 248 87.9
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 5.0e-121 438.0 241 88.0
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.1e-120 436.8 246 88.2
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.4e-120 436.4 244 88.1
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.5e-120 435.6 247 86.6
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 4.2e-120 434.9 244 87.3
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 5.5e-120 434.5 241 87.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 5.5e-120 434.5 293 77.5
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 7.2e-120 434.1 240 87.5
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 2.1e-119 432.6 249 87.6
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 2.7e-119 432.2 246 87.0
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.7e-119 432.2 244 87.3
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 2.7e-119 432.2 268 81.7
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 6.1e-119 431.0 241 86.3
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 6.1e-119 431.0 241 86.3
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.0e-118 430.3 249 87.6
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.4e-118 429.9 246 86.2
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 2.3e-118 429.1 241 86.3
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 2.3e-118 429.1 243 86.8
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.9e-118 428.3 241 86.3
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 6.7e-118 427.6 241 86.3
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 6.7e-118 427.6 241 86.3
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-117 426.8 241 86.3
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-117 426.8 241 86.3
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.1e-117 426.8 241 86.7
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.5e-117 426.4 248 83.1
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 2.0e-117 426.0 241 85.9
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 4.4e-117 424.9 241 85.9
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 4.4e-117 424.9 241 85.9
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 5.7e-117 424.5 233 90.1
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 3.1e-115 418.7 266 79.3
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.1e-115 418.3 297 72.7
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 4.1e-115 418.3 241 85.1
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.3e-113 413.3 230 87.4
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.5e-112 409.1 246 82.9
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.0e-110 403.7 246 80.5
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 8.8e-110 400.6 250 80.4
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 2.0e-109 399.4 244 78.7
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 4.8e-108 394.8 360 59.2
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.1e-107 391.7 252 80.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 2.1e-103 379.4 242 76.4
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 4.7e-103 378.3 212 88.7
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 4.0e-102 375.2 249 71.1
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 8.8e-102 374.0 220 81.8
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 3.4e-101 372.1 245 78.0
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.4e-99 366.7 238 76.1
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 6.6e-97 357.8 250 74.4
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 2.3e-94 349.4 228 77.6
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.5e-93 346.7 246 74.8
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.4e-91 338.2 206 82.0
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.5e-90 335.1 194 87.1
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.6e-87 326.6 238 66.0
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.2e-85 320.5 175 89.7
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.4e-83 312.8 324 56.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 4.6e-82 308.5 187 82.9
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 6.6e-73 278.1 151 90.1
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 3.3e-72 275.8 240 55.4
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 9.5e-72 274.2 202 70.8
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-69 267.3 175 76.0
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 4.1e-67 258.8 210 69.0
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 6.6e-65 251.5 253 51.0
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 8.6e-65 251.1 152 79.6
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 2.0e-61 240.0 195 65.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.6e-58 230.3 248 54.4
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.2e-53 214.2 118 89.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 6.6e-49 198.4 112 86.6
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.6e-48 195.3 99 93.9
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.4e-46 190.7 249 45.4
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.4e-43 178.7 94 89.4
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 2.7e-42 176.4 96 86.5
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.1e-39 166.8 253 34.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.1e-39 166.8 158 63.3
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 5.3e-38 162.2 94 84.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 3.4e-37 159.5 90 83.3
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.5e-29 134.0 128 60.9
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 7.2e-19 98.6 65 66.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.4e-17 94.4 98 54.1
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 4.3e-16 89.4 136 44.9
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.1e-14 84.7 55 76.4
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 5.3e-14 82.4 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 7.7e-13 78.6 56 73.2
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 6.7e-09 65.5 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 3.3e-08 63.2 55 63.6


User provided reference genes

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