Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 0.0e+00 1254.6 675 100.0
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.2e-88 329.7 644 37.9
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 2.7e-84 317.4 658 37.2
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 5.1e-59 233.4 627 31.6
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 6.2e-41 173.3 521 28.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.3e-38 165.6 608 27.8
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.7e-38 165.2 470 30.4
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.9e-38 163.7 615 27.6
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.3e-35 155.6 219 41.6
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.8e-35 155.2 243 42.0
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.3e-35 154.8 454 34.8
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 2.3e-35 154.8 631 28.5
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 5.1e-35 153.7 603 29.2
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.9e-34 151.8 615 27.5
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 4.3e-34 150.6 207 44.0
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.6e-34 150.2 615 27.2
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.4e-34 149.8 615 27.3
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 2.1e-33 148.3 187 43.9
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 3.5e-28 131.0 505 26.3
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 4.6e-28 130.6 246 38.2
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 7.9e-28 129.8 219 37.9
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 5.1e-27 127.1 445 31.9
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 5.1e-27 127.1 192 39.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 5.7e-26 123.6 615 25.2
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 7.4e-26 123.2 221 37.6
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.3e-25 122.5 284 36.3
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.6e-25 122.1 479 28.4
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 3.7e-25 120.9 191 40.8
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 6.3e-25 120.2 500 28.2
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 4.1e-24 117.5 512 27.9
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 6.9e-24 116.7 446 24.4
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 3.4e-23 114.4 506 27.7
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 8.5e-22 109.8 278 33.5
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.5e-22 109.8 512 27.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.9e-21 108.6 184 34.2
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.2e-21 107.8 289 29.8
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 5.5e-21 107.1 206 35.0
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 6.1e-20 103.6 235 30.6
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 5.1e-19 100.5 272 29.4
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.1e-19 100.5 342 30.7
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 6.7e-19 100.1 185 37.8
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.5e-18 98.2 149 41.6
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 4.3e-18 97.4 103 46.6
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.7e-18 97.1 272 28.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 5.7e-18 97.1 284 32.4
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 7.4e-18 96.7 204 34.3
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 9.7e-18 96.3 162 36.4
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 4.8e-17 94.0 186 34.9
TAR381G0115 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.8e-17 94.0 415 27.5
Cpa.g.sc1156.1 Carica papaya HOM05D029276 ORTHO05D003486 6.3e-17 93.6 463 23.5
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 8.2e-17 93.2 180 36.1
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 8.2e-17 93.2 187 34.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.1e-16 92.8 308 29.5
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.4e-16 91.7 236 31.8
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.4e-16 91.7 198 32.8
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 3.1e-16 91.3 143 39.2
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.3e-16 90.5 180 35.6
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 5.3e-16 90.5 189 36.5
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.5e-15 89.0 255 30.2
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.0e-15 88.6 105 45.7
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.6e-15 88.2 450 23.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 2.6e-15 88.2 208 30.3
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.5e-15 87.4 175 33.7
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.7e-15 86.7 229 28.4
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 7.7e-15 86.7 204 28.9
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.7e-15 86.7 150 36.0
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 1.0e-14 86.3 177 32.8
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.3e-14 85.9 149 38.9
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.3e-14 85.9 99 48.5
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.7e-14 85.5 206 30.1
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.2e-14 85.1 309 27.8
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.2e-14 85.1 219 29.2
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 2.9e-14 84.7 138 38.4
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.8e-14 84.3 86 47.7
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 3.8e-14 84.3 389 27.0
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 3.8e-14 84.3 259 30.1
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 3.8e-14 84.3 86 46.5
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 5.0e-14 84.0 150 36.7
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 5.0e-14 84.0 181 30.9
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 6.5e-14 83.6 186 32.8
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 8.5e-14 83.2 176 35.2
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 8.5e-14 83.2 221 31.2
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.1e-13 82.8 150 36.7
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.4e-13 82.4 182 30.8
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.4e-13 82.4 182 30.8
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.4e-13 82.4 112 42.9
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.9e-13 82.0 179 33.5
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.9e-13 82.0 207 30.4
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.9e-13 82.0 179 34.1
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.5e-13 81.6 180 33.9
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.5e-13 81.6 310 29.0
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.5e-13 81.6 461 25.4
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.2e-13 81.3 86 44.2
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 4.2e-13 80.9 179 31.8
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.2e-13 80.9 177 33.9
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 4.2e-13 80.9 306 26.5
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 4.2e-13 80.9 302 28.5
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.5e-13 80.5 148 40.5
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 5.5e-13 80.5 400 26.8
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 7.2e-13 80.1 196 34.2
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 7.2e-13 80.1 312 28.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.2e-13 80.1 126 37.3
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.2e-13 80.1 149 34.9
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 9.4e-13 79.7 94 45.7
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.2e-12 79.3 177 33.3
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.2e-12 79.3 442 24.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.2e-12 79.3 146 36.3
Haze_13715 Corylus avellana HOM05D000160 ORTHO05D010424 1.6e-12 79.0 179 31.8
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.1e-12 78.6 150 39.3
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.1e-12 78.6 259 27.0
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.7e-12 78.2 312 28.5
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.7e-12 78.2 94 44.7
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 3.6e-12 77.8 88 43.2
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 7.9e-12 76.6 284 26.4
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.0e-11 76.3 90 47.8
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.4e-11 75.9 160 33.8
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-11 75.1 221 28.1
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 2.3e-11 75.1 179 33.0
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.0e-11 74.7 149 38.9
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 3.0e-11 74.7 258 29.1
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.0e-11 74.7 123 33.3
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 3.9e-11 74.3 259 27.8
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 5.1e-11 73.9 259 27.8
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 5.1e-11 73.9 259 27.8
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 5.1e-11 73.9 88 40.9
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 6.7e-11 73.6 140 35.7
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 8.8e-11 73.2 89 40.4
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.5e-10 72.4 89 41.6
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 2.0e-10 72.0 119 37.0
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.0e-10 72.0 88 44.3
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 2.0e-10 72.0 183 31.1
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 2.6e-10 71.6 83 47.0
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 3.3e-10 71.2 161 33.5
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 3.3e-10 71.2 161 33.5
Haze_13138 Corylus avellana HOM05D006236 ORTHO05D003486 4.4e-10 70.9 146 36.3
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.4e-10 70.9 469 23.2
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 7.4e-10 70.1 105 40.0
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 7.4e-10 70.1 105 40.0
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 7.4e-10 70.1 200 28.5
vmacro00868 Vaccinium macrocarpon HOM05D029276 ORTHO05D003486 7.4e-10 70.1 272 27.9
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 9.7e-10 69.7 382 24.3
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 2.2e-09 68.6 145 35.2
DCAR_014364 Daucus carota HOM05D006236 ORTHO05D003486 2.8e-09 68.2 169 30.2
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 4.8e-09 67.4 234 28.2
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.8e-09 67.4 119 31.1
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 8.2e-09 66.6 88 42.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.4e-08 65.9 89 39.3
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.4e-08 65.9 89 39.3
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 1.4e-08 65.9 179 28.5
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 1.8e-08 65.5 234 27.8
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.4e-08 65.1 89 39.3
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.4e-08 65.1 89 39.3
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.1e-08 64.7 89 37.1
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 4.1e-08 64.3 88 38.6
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 4.1e-08 64.3 88 38.6
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 4.1e-08 64.3 87 35.6
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 5.3e-08 63.9 89 37.1
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 5.3e-08 63.9 467 20.3
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 7.0e-08 63.5 212 29.7
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 9.1e-08 63.2 182 28.6
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.2e-07 62.8 208 25.0
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.2e-07 62.8 172 29.7
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 3.4e-07 61.2 102 38.2
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.0e-06 59.7 88 36.4
ATR0824G047 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.7e-06 58.9 60 48.3
Lj4P677T27 Lonicera japonica HOM05D046523 ORTHO05D048438 1.7e-06 58.9 105 36.2
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.7e-06 58.9 89 37.1
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.2e-06 58.5 89 37.1
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.2e-06 58.5 86 36.0
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 2.2e-06 58.5 85 41.2
Rhsim11G0072200 Rhododendron simsii HOM05D029276 ORTHO05D003486 2.2e-06 58.5 119 37.8
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 2.9e-06 58.2 103 34.0


User provided reference genes

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