Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 4.2e-100 368.2 215 100.0
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 1.0e-98 363.6 215 98.6
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 6.8e-74 281.2 215 72.6
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 1.6e-70 270.0 216 69.9
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 1.4e-66 256.9 209 67.5
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 1.4e-66 256.9 215 66.0
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.2e-65 253.8 217 63.1
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 2.0e-65 253.1 209 65.1
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.6e-65 252.7 217 63.1
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.4e-65 251.9 217 62.7
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 3.7e-64 248.8 215 67.4
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 4.9e-64 248.4 215 64.2
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 8.3e-64 247.7 216 70.8
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.1e-63 247.3 212 64.2
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 1.4e-63 246.9 216 66.7
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 1.4e-63 246.9 210 64.3
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 2.4e-63 246.1 235 62.1
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 5.4e-63 245.0 209 63.6
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 5.4e-63 245.0 214 65.0
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 9.2e-63 244.2 215 62.3
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 1.6e-62 243.4 153 81.0
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 2.7e-62 242.7 218 60.1
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 4.5e-62 241.9 214 64.0
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 1.0e-61 240.7 209 60.8
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.7e-61 240.0 214 63.6
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.7e-61 240.0 215 61.4
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 2.3e-61 239.6 209 62.2
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 6.6e-61 238.0 215 63.3
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 8.6e-61 237.7 220 62.7
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 8.6e-61 237.7 209 60.8
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 2.5e-60 236.1 213 62.9
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 2.5e-60 236.1 218 60.6
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 4.3e-60 235.3 221 59.7
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 9.5e-60 234.2 209 63.6
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.2e-59 233.8 215 58.1
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 2.8e-59 232.6 207 62.3
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 3.6e-59 232.3 213 57.3
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 6.1e-59 231.5 215 57.7
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 8.0e-59 231.1 209 63.2
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 1.0e-58 230.7 211 59.7
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 1.8e-58 229.9 245 54.3
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 1.8e-58 229.9 209 60.8
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 5.2e-58 228.4 215 57.7
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 8.9e-58 227.6 219 59.8
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.5e-57 226.9 220 57.7
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 5.7e-57 224.9 139 79.9
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.5e-57 224.6 217 59.0
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 3.7e-56 222.2 209 58.9
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 6.4e-56 221.5 211 58.8
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 4.1e-55 218.8 210 57.6
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 2.0e-54 216.5 212 54.2
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 3.5e-54 215.7 209 59.3
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 3.5e-54 215.7 214 56.5
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 3.5e-54 215.7 226 62.4
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 4.6e-54 215.3 209 59.8
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 5.9e-54 214.9 180 64.4
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 1.3e-53 213.8 236 52.1
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 3.0e-53 212.6 161 67.7
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 5.0e-53 211.8 212 55.7
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 8.6e-53 211.1 225 55.6
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 8.6e-53 211.1 226 60.2
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.1e-52 210.7 222 54.1
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.5e-52 210.3 224 55.4
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 2.5e-52 209.5 209 54.5
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 3.3e-52 209.1 224 55.4
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 5.6e-52 208.4 210 52.4
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 7.3e-52 208.0 218 53.7
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 9.5e-52 207.6 234 52.6
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 3.6e-51 205.7 287 49.5
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 6.2e-51 204.9 216 52.8
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 8.0e-51 204.5 211 55.5
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 2.3e-50 203.0 216 53.7
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 8.9e-50 201.1 215 55.3
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 4.4e-49 198.7 215 51.6
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 7.5e-49 198.0 201 55.2
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 1.7e-48 196.8 215 51.6
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 6.4e-48 194.9 211 51.7
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 1.1e-47 194.1 209 51.2
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.4e-47 193.7 211 51.2
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 1.4e-47 193.7 211 51.7
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.4e-47 193.7 211 51.2
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 3.2e-47 192.6 215 52.1
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.6e-46 190.3 201 55.7
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.0e-46 189.9 125 76.8
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 2.0e-46 189.9 259 48.3
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 3.5e-46 189.1 217 51.6
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 3.5e-46 189.1 214 52.3
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 6.6e-45 184.9 215 52.6
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 7.3e-44 181.4 240 47.1
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 1.5e-41 173.7 211 46.4
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 2.0e-41 173.3 235 46.8
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 3.7e-40 169.1 140 60.0
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 7.8e-38 161.4 114 70.2
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 3.4e-33 146.0 128 61.7
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.7e-32 143.7 153 53.6
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.2e-30 137.5 209 43.1
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 8.1e-27 124.8 78 76.9
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 2.4e-26 123.2 217 41.0
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 9.9e-25 117.9 69 81.2
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.9e-23 113.6 141 50.4
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 2.4e-23 113.2 131 51.9
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 7.1e-23 111.7 141 50.4
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 5.1e-21 105.5 97 53.6
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.5e-20 103.2 217 35.9
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 2.0e-17 93.6 144 42.4
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 8.4e-16 88.2 55 78.2
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.1e-15 87.8 84 50.0
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 7.1e-15 85.1 84 50.0
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.5e-12 77.4 47 72.3
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 2.2e-08 63.5 132 30.3
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 2.9e-08 63.2 99 33.3
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 6.4e-08 62.0 130 30.8
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 6.4e-08 62.0 99 32.3
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 8.4e-08 61.6 134 29.9
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 1.1e-07 61.2 127 29.1
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 1.1e-07 61.2 109 31.2
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 1.4e-07 60.8 107 31.8
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 1.9e-07 60.5 119 32.8
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 3.2e-07 59.7 126 31.0
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.2e-07 59.3 102 37.3
Lj4A625G10 Lonicera japonica HOM05D005920 ORTHO05D007211 5.5e-07 58.9 119 28.6
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 9.3e-07 58.2 134 29.9
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 9.3e-07 58.2 147 24.5
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 9.3e-07 58.2 123 31.7
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 9.3e-07 58.2 123 31.7
BcaB05g23941 Brassica carinata HOM05D005920 ORTHO05D007211 1.2e-06 57.8 127 29.1
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 1.2e-06 57.8 126 30.2
THA.LOC104817311 Tarenaya hassleriana HOM05D005920 ORTHO05D007211 1.2e-06 57.8 141 28.4
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 1.6e-06 57.4 127 29.1
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 1.6e-06 57.4 109 31.2
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 2.1e-06 57.0 126 31.0
Psat6g041000 Pisum sativum HOM05D005920 ORTHO05D007211 2.1e-06 57.0 132 28.8
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 3.5e-06 56.2 125 31.2
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 3.5e-06 56.2 108 30.6
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 4.6e-06 55.8 155 27.1
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 4.6e-06 55.8 156 26.3
CARHR259410 Cardamine hirsuta HOM05D005920 ORTHO05D007211 4.6e-06 55.8 141 28.4
FvH4_2g26830 Fragaria vesca HOM05D005920 ORTHO05D007211 4.6e-06 55.8 140 26.4
FAN24G0658 Fragaria x ananassa HOM05D005920 ORTHO05D007211 4.6e-06 55.8 125 28.8
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 4.6e-06 55.8 132 28.0
Thecc.08G124700 Theobroma cacao HOM05D005920 ORTHO05D007211 4.6e-06 55.8 149 27.5
AT4G08320 Arabidopsis thaliana HOM05D005920 ORTHO05D007211 6.0e-06 55.5 127 28.3
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 6.0e-06 55.5 156 26.3
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 7.9e-06 55.1 148 27.0
Haze_17648 Corylus avellana HOM05D006959 ORTHO05D008808 7.9e-06 55.1 91 45.1
Duzib093G1431 Durio zibethinus HOM05D005920 ORTHO05D007211 7.9e-06 55.1 130 28.5
Duzib116G0551 Durio zibethinus HOM05D005920 ORTHO05D007211 7.9e-06 55.1 137 27.7
Gohir.A05G234800 Gossypium hirsutum HOM05D005920 ORTHO05D007211 7.9e-06 55.1 138 27.5
Gohir.D05G237100 Gossypium hirsutum HOM05D005920 ORTHO05D007211 7.9e-06 55.1 138 27.5
Gorai.009G245500 Gossypium raimondii HOM05D005920 ORTHO05D007211 7.9e-06 55.1 138 27.5


User provided reference genes

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