Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p028133 Quercus lobata HOM05D009378 ORTHO05D010101 1.8e-190 669.1 344 100.0
Haze_19953 Corylus avellana HOM05D009378 ORTHO05D010101 3.0e-68 263.1 337 46.0
Cfa013571 Carpinus fangiana HOM05D000125 ORTHO05D010101 4.4e-67 259.2 344 45.1
Cfa016894 Carpinus fangiana HOM05D000125 ORTHO05D010101 5.8e-59 232.3 342 43.3
QL09p024149 Quercus lobata HOM05D009378 ORTHO05D010101 1.6e-32 144.4 354 34.2
QL09p024465 Quercus lobata HOM05D000125 ORTHO05D010101 2.3e-31 140.6 348 33.3
QL09p024013 Quercus lobata HOM05D008014 ORTHO05D010101 3.0e-31 140.2 248 35.9
QL09p024175 Quercus lobata HOM05D009378 ORTHO05D010101 3.9e-31 139.8 264 37.5
QL93p0209_0042 Quercus lobata HOM05D009378 ORTHO05D010101 3.9e-31 139.8 259 39.0
Cfa016029 Carpinus fangiana HOM05D009378 ORTHO05D010101 8.7e-31 138.7 341 32.6
Haze_00404 Corylus avellana HOM05D000125 ORTHO05D010101 8.7e-31 138.7 340 33.2
Haze_13413 Corylus avellana HOM05D000125 ORTHO05D010101 4.3e-30 136.3 358 32.1
Cfa007320 Carpinus fangiana HOM05D000125 ORTHO05D010101 5.6e-30 136.0 357 31.9
QL93p0209_0016 Quercus lobata HOM05D009378 ORTHO05D010101 5.6e-30 136.0 260 37.7
Cfa016027 Carpinus fangiana HOM05D009378 ORTHO05D010101 7.3e-30 135.6 340 33.8
QL09p024439 Quercus lobata HOM05D009378 ORTHO05D010101 7.3e-30 135.6 256 35.9
Haze_14777 Corylus avellana HOM05D000125 ORTHO05D010101 2.4e-28 130.6 357 32.5
TWI81G0642 Tripterygium wilfordii HOM05D000125 ORTHO05D010101 2.4e-28 130.6 354 29.4
QL09p024027 Quercus lobata HOM05D009378 ORTHO05D010101 5.3e-28 129.4 246 38.2
Cfa016030 Carpinus fangiana HOM05D000125 ORTHO05D010101 1.2e-27 128.3 342 33.0
CiPaw.06G031800 Carya illinoinensis HOM05D000125 ORTHO05D010101 1.5e-27 127.9 350 33.1
Cfa016031 Carpinus fangiana HOM05D000125 ORTHO05D010101 5.8e-27 125.9 340 32.4
QL05p062837 Quercus lobata HOM05D009378 ORTHO05D010101 5.8e-27 125.9 259 36.3
Haze_00406 Corylus avellana HOM05D000125 ORTHO05D010101 2.2e-26 124.0 342 30.1
PGR031G1316 Punica granatum HOM05D000125 ORTHO05D010101 2.7e-24 117.1 240 32.1
Haze_00427 Corylus avellana HOM05D000125 ORTHO05D010101 5.1e-23 112.8 218 36.2
CSS0030731 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 3.3e-22 110.2 259 31.7
Eucgr.E00385 Eucalyptus grandis HOM05D000125 ORTHO05D010101 1.4e-20 104.8 250 31.2
PGR044G2047 Punica granatum HOM05D009378 ORTHO05D010101 3.1e-20 103.6 201 32.8
CSS0022186 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 6.9e-20 102.4 180 34.4
CSS0003791 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 9.0e-20 102.1 183 33.9
Cpa.g.sc623.3 Carica papaya HOM05D009378 ORTHO05D010101 2.0e-19 100.9 255 30.6
QL04p029779 Quercus lobata HOM05D020596 ORTHO05D010101 2.6e-19 100.5 338 28.1
Haze_00511 Corylus avellana HOM05D009378 ORTHO05D010101 4.5e-19 99.8 176 40.3
PGR102G3309 Punica granatum HOM05D000125 ORTHO05D010101 7.6e-19 99.0 260 30.4
CSS0003795 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D010101 1.7e-18 97.8 190 33.7
QL04p029580 Quercus lobata HOM05D000125 ORTHO05D000120 2.2e-18 97.4 175 34.3
QL04p029877 Quercus lobata HOM05D020596 ORTHO05D010101 2.2e-18 97.4 175 34.3
CSS0029307 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 2.9e-18 97.1 231 32.5
QL02p073603 Quercus lobata HOM05D000125 ORTHO05D010101 2.9e-18 97.1 344 29.4
QL04p029700 Quercus lobata HOM05D020596 ORTHO05D010101 4.9e-18 96.3 162 35.8
PGR031G1223 Punica granatum HOM05D009378 ORTHO05D010101 6.4e-18 95.9 169 31.4
CSS0032415 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 8.4e-18 95.5 190 33.7
CSS0027146 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 1.4e-17 94.7 153 35.3
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 3.2e-17 93.6 156 35.9
CANSAT21G1400 Cannabis sativa HOM05D000125 ORTHO05D010101 9.3e-17 92.0 256 29.3
Sed0024411 Sechium edule HOM05D024292 ORTHO05D010101 9.3e-17 92.0 256 27.3
Eucgr.E00390 Eucalyptus grandis HOM05D009378 ORTHO05D010101 4.6e-16 89.7 305 25.9
PGR042G0442 Punica granatum HOM05D000125 ORTHO05D000807 6.0e-16 89.4 211 32.7
Cpa.g.sc623.1 Carica papaya HOM05D009378 ORTHO05D010101 7.9e-16 89.0 257 28.4
CSS0042755 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 1.8e-15 87.8 179 33.5
QL04p029334 Quercus lobata HOM05D020596 ORTHO05D010101 1.8e-15 87.8 290 28.6
CANSAT21G1703 Cannabis sativa HOM05D000125 ORTHO05D000120 3.0e-15 87.0 256 30.5
Eucgr.E00393 Eucalyptus grandis HOM05D000125 ORTHO05D000120 3.9e-15 86.7 263 27.0
QL04p029513 Quercus lobata HOM05D000125 ORTHO05D000120 3.9e-15 86.7 255 30.2
Actinidia02169 Actinidia chinensis HOM05D000125 ORTHO05D030879 6.7e-15 85.9 200 33.0
CSS0034581 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 7.4e-14 82.4 207 31.4
CSS0010878 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 3.7e-13 80.1 248 28.6
Haze_00441 Corylus avellana HOM05D000125 ORTHO05D010101 1.4e-12 78.2 240 31.2
CSS0047661 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 9.0e-12 75.5 207 29.0
Haze_00401 Corylus avellana HOM05D009378 ORTHO05D010101 2.6e-11 73.9 122 41.0
CANSAT11G0593 Cannabis sativa HOM05D000125 ORTHO05D010101 3.4e-11 73.6 179 34.1
CANSAT11G2286 Cannabis sativa HOM05D000125 ORTHO05D010101 3.4e-11 73.6 179 34.1
CANSAT11G2008 Cannabis sativa HOM05D000125 ORTHO05D010101 5.8e-11 72.8 265 23.8
Ciclev10014060m.g Citrus clementina HOM05D000125 ORTHO05D000120 1.7e-10 71.2 265 23.4
CANSAT11G1144 Cannabis sativa HOM05D000125 ORTHO05D010101 2.2e-10 70.9 176 33.0
CANSAT11G0715 Cannabis sativa HOM05D000125 ORTHO05D000120 8.4e-10 68.9 176 26.7
CANSAT78G1599 Cannabis sativa HOM05D000125 ORTHO05D000120 3.2e-09 67.0 260 26.2
CANSAT11G1920 Cannabis sativa HOM05D000125 ORTHO05D000120 4.2e-09 66.6 261 26.8
Gohir.A04G040400 Gossypium hirsutum HOM05D008014 ORTHO05D009981 3.5e-08 63.5 172 26.7
Gohir.D05G343433 Gossypium hirsutum HOM05D008014 ORTHO05D009981 3.5e-08 63.5 217 23.0
CANSAT11G0780 Cannabis sativa HOM05D000125 ORTHO05D010101 3.0e-07 60.5 241 23.2
Duzib205G1694 Durio zibethinus HOM05D008014 ORTHO05D009981 5.1e-07 59.7 150 23.3
Medtr1g112660 Medicago truncatula HOM05D002972 ORTHO05D002272 5.1e-07 59.7 152 29.6
CANSAT11G2064 Cannabis sativa HOM05D000125 ORTHO05D010101 6.7e-07 59.3 169 25.4
Gohir.A01G057400 Gossypium hirsutum HOM05D008014 ORTHO05D009981 6.7e-07 59.3 155 28.4
Gohir.A01G057332 Gossypium hirsutum HOM05D008014 ORTHO05D009981 8.7e-07 58.9 272 21.7
Gorai.009G369100 Gossypium raimondii HOM05D008014 ORTHO05D009981 8.7e-07 58.9 201 25.9
Gorai.009G369600 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.1e-06 58.5 312 22.1
QL04p029600 Quercus lobata HOM05D020596 ORTHO05D338220 1.1e-06 58.5 171 31.0
Duzib213G1088 Durio zibethinus HOM05D008014 ORTHO05D009981 1.9e-06 57.8 200 26.5
Lj5g0016622 Lotus japonicus HOM05D002972 ORTHO05D002272 1.9e-06 57.8 153 29.4
Phvul.007G019100 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 1.9e-06 57.8 146 27.4
COL.COLO4_30081 Corchorus olitorius HOM05D008014 ORTHO05D009981 2.5e-06 57.4 138 27.5
Gohir.D05G342800 Gossypium hirsutum HOM05D008014 ORTHO05D009981 3.3e-06 57.0 216 27.8
Gorai.009G369400 Gossypium raimondii HOM05D008014 ORTHO05D009981 3.3e-06 57.0 211 27.0
CANSAT01G1477 Cannabis sativa HOM05D000125 ORTHO05D010101 5.7e-06 56.2 227 22.5
CANSAT11G0087 Cannabis sativa HOM05D000125 ORTHO05D000120 7.4e-06 55.8 174 24.7


User provided reference genes

Program Settings