Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 2.9e-106 388.7 206 100.0
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 1.4e-81 306.6 215 74.0
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 3.0e-79 298.9 209 73.2
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 3.0e-79 298.9 203 73.4
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 6.7e-79 297.7 196 76.0
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.1e-78 297.0 202 75.2
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.9e-78 296.2 203 75.4
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 2.5e-78 295.8 203 74.9
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.3e-78 295.4 196 77.0
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 5.7e-78 294.7 208 73.1
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 5.7e-78 294.7 204 74.0
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 7.4e-78 294.3 204 76.0
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 7.4e-78 294.3 204 73.0
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 2.1e-77 292.7 206 73.8
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 3.7e-77 292.0 198 76.8
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 3.7e-77 292.0 210 74.3
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 8.2e-77 290.8 205 75.6
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 8.2e-77 290.8 215 70.2
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 1.1e-76 290.4 198 76.8
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.8e-76 289.7 197 73.1
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.8e-76 289.7 200 74.0
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.8e-76 289.7 215 70.2
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.4e-76 289.3 206 75.7
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 4.1e-76 288.5 196 76.5
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 6.9e-76 287.7 207 72.0
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.5e-75 286.6 196 75.0
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 2.0e-75 286.2 204 71.1
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 4.5e-75 285.0 205 72.7
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 1.0e-74 283.9 197 73.6
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 1.0e-74 283.9 196 79.1
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 1.0e-74 283.9 204 76.0
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 5.0e-74 281.6 203 74.4
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 6.5e-74 281.2 198 73.2
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 6.5e-74 281.2 206 70.4
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 1.1e-73 280.4 209 70.3
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 1.4e-73 280.0 202 71.3
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.9e-73 279.6 201 74.6
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 4.2e-73 278.5 206 69.9
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.1e-72 276.2 196 74.0
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 6.1e-72 274.6 201 70.6
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 6.1e-72 274.6 207 76.8
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.3e-71 273.5 204 71.1
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.8e-71 273.1 206 71.8
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 2.3e-71 272.7 200 69.0
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 2.3e-71 272.7 218 66.1
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 6.7e-71 271.2 197 72.6
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 1.5e-70 270.0 210 70.0
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.9e-70 269.6 198 68.7
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 3.3e-70 268.9 196 72.4
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.3e-69 266.9 198 75.3
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.3e-69 266.9 208 71.6
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.6e-69 266.5 202 67.3
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 3.7e-69 265.4 208 73.6
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 3.7e-69 265.4 197 68.0
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 4.8e-69 265.0 195 71.3
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 4.8e-69 265.0 196 73.0
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 6.3e-69 264.6 195 73.8
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 8.2e-69 264.2 200 67.0
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 1.1e-68 263.8 200 67.5
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 1.1e-68 263.8 197 74.6
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.4e-68 263.5 192 73.4
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 2.4e-68 262.7 205 69.8
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 3.1e-68 262.3 187 74.3
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 6.9e-68 261.2 184 73.9
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 6.9e-68 261.2 196 74.0
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 9.1e-68 260.8 202 69.8
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.5e-67 260.0 202 69.3
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 2.6e-67 259.2 194 68.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.6e-67 259.2 202 71.3
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 5.9e-67 258.1 206 68.4
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 5.9e-67 258.1 185 75.7
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 7.7e-67 257.7 194 70.1
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.0e-66 257.3 197 70.1
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.0e-66 257.3 205 72.2
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 1.3e-66 256.9 202 69.8
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 1.3e-66 256.9 202 69.8
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 1.7e-66 256.5 200 69.5
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.9e-66 255.8 202 70.8
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.8e-66 255.4 196 73.5
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 6.5e-66 254.6 200 71.0
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 6.5e-66 254.6 202 66.8
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 1.9e-65 253.1 186 73.1
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 5.5e-65 251.5 201 67.2
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 5.5e-65 251.5 198 70.2
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 7.9e-64 247.7 204 67.6
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.8e-63 246.5 193 69.4
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 2.3e-63 246.1 205 66.8
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 8.8e-63 244.2 186 70.4
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.1e-62 243.8 142 83.1
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.1e-62 243.8 142 83.1
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.1e-62 243.8 203 67.0
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 2.0e-62 243.0 185 74.1
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 5.7e-62 241.5 207 68.1
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.3e-61 240.4 142 82.4
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 2.2e-61 239.6 196 68.4
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 6.3e-61 238.0 197 69.5
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 6.3e-61 238.0 187 69.0
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.4e-60 236.9 189 65.6
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 9.1e-60 234.2 197 68.5
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 9.1e-60 234.2 205 63.4
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 1.2e-59 233.8 158 72.2
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.0e-59 233.0 140 80.7
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 1.4e-57 226.9 191 61.3
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 2.5e-57 226.1 200 64.5
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 9.4e-57 224.2 128 82.0
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 2.1e-56 223.0 208 58.2
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 7.9e-56 221.1 191 64.4
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 1.0e-55 220.7 191 68.6
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.5e-54 216.9 197 62.9
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 3.3e-54 215.7 153 75.2
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.8e-53 212.6 181 63.0
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.8e-53 212.6 189 63.5
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 8.2e-53 211.1 125 77.6
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 7.7e-51 204.5 159 68.6
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.2e-48 197.2 103 88.3
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 2.1e-48 196.4 139 69.1
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 3.0e-47 192.6 159 67.3
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 7.5e-46 188.0 100 87.0
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 3.7e-45 185.7 91 92.3
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.0e-38 163.3 205 52.7
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 5.0e-34 148.7 82 81.7
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.2e-30 137.5 122 63.1
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 8.3e-29 131.3 101 55.4
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.9e-26 122.9 209 45.5
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 6.6e-26 121.7 59 93.2
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 6.6e-26 121.7 121 55.4
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 5.2e-23 112.1 93 54.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.3e-21 107.5 106 48.1
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-17 92.8 83 56.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.8e-15 87.0 59 69.5
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 4.4e-14 82.4 100 43.0
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 7.8e-11 71.6 35 88.6
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.3e-10 70.9 82 47.6
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 4.0e-07 59.3 55 60.0
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.2e-07 58.9 101 43.6
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 4.4e-06 55.8 83 42.2


User provided reference genes

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