Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 7.2e-59 232.3 119 100.0
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 7.2e-59 232.3 119 100.0
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 3.4e-24 117.1 107 61.7
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 9.8e-24 115.5 107 60.7
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 5.4e-22 109.8 83 67.5
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 9.5e-19 99.0 88 54.5
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 1.6e-18 98.2 88 54.5
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 8.1e-18 95.9 88 53.4
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 3.1e-17 94.0 88 54.5
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 6.8e-17 92.8 62 72.6
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 1.2e-16 92.0 119 46.2
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 1.3e-15 88.6 62 59.7
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 1.7e-15 88.2 64 59.4
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 1.7e-15 88.2 62 61.3
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 3.7e-15 87.0 112 45.5
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 3.7e-15 87.0 112 45.5
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 4.9e-15 86.7 64 57.8
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 6.4e-15 86.3 76 53.9
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 6.4e-15 86.3 62 59.7
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 1.1e-14 85.5 87 51.7
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 1.4e-14 85.1 61 60.7
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 2.4e-14 84.3 74 55.4
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 2.4e-14 84.3 122 43.4
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 2.4e-14 84.3 100 49.0
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 5.4e-14 83.2 72 56.9
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 5.4e-14 83.2 78 53.8
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 5.4e-14 83.2 61 57.4
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 9.2e-14 82.4 89 50.6
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 1.2e-13 82.0 91 50.5
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 1.0e-12 79.0 61 59.0
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 1.0e-12 79.0 112 46.4
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 1.3e-12 78.6 98 44.9
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 1.7e-12 78.2 62 62.9
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 2.3e-12 77.8 76 50.0
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 3.9e-12 77.0 76 51.3
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 3.9e-12 77.0 60 63.3
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.1e-11 75.5 76 48.7
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 1.1e-11 75.5 123 41.5
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 4.3e-11 73.6 62 58.1
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 5.6e-11 73.2 60 53.3
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 5.6e-11 73.2 98 44.9
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 7.3e-11 72.8 68 54.4
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 9.5e-11 72.4 101 42.6
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 9.5e-11 72.4 68 54.4
Ciclev10011504m.g Citrus clementina HOM05D007456 ORTHO05D009411 1.6e-10 71.6 99 43.4
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 3.6e-10 70.5 68 50.0
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 3.6e-10 70.5 58 55.2
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 3.6e-10 70.5 61 52.5
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 1.1e-09 68.9 61 52.5
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 1.1e-09 68.9 61 52.5
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 1.1e-09 68.9 74 47.3
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 3.1e-09 67.4 61 50.8
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 5.2e-09 66.6 60 53.3
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 6.8e-09 66.2 61 54.1
CANSAT54G1256 Cannabis sativa HOM05D007456 ORTHO05D028426 1.2e-08 65.5 71 45.1
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.2e-08 65.5 113 38.9
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 1.5e-08 65.1 62 54.8
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 1.5e-08 65.1 61 47.5
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 3.4e-08 63.9 65 49.2
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 7.6e-08 62.8 51 51.0
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 7.6e-08 62.8 61 49.2
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 9.9e-08 62.4 61 49.2
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 9.9e-08 62.4 61 49.2
Prupe.2G323300 Prunus persica HOM05D007456 ORTHO05D009411 9.9e-08 62.4 107 43.0
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 3.7e-07 60.5 61 49.2
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 4.9e-07 60.1 46 58.7
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 1.1e-06 58.9 61 49.2
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 1.1e-06 58.9 46 56.5
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 1.1e-06 58.9 61 52.5
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 1.9e-06 58.2 134 34.3
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 4.1e-06 57.0 61 47.5
LjContig00222g0011827 Lotus japonicus HOM05D007456 ORTHO05D009411 4.1e-06 57.0 71 47.9
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 9.2e-06 55.8 36 72.2
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 9.2e-06 55.8 36 72.2


User provided reference genes

Program Settings