Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.7e-56 222.6 125 100.0
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.3e-32 143.3 130 61.5
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.2e-30 136.7 133 61.7
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 8.6e-29 130.6 129 58.1
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 2.1e-27 125.9 127 58.3
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 3.0e-26 122.1 128 53.1
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.0e-26 121.7 125 57.6
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.2e-25 120.2 131 56.5
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 2.6e-25 119.0 128 53.9
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.4e-25 118.6 131 55.0
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 5.8e-25 117.9 136 52.9
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 7.5e-25 117.5 123 54.5
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.3e-24 116.7 125 57.6
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.3e-24 116.7 128 54.7
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.7e-24 116.3 129 55.0
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.2e-24 115.9 129 55.0
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.2e-24 115.9 129 55.0
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.2e-24 115.9 124 54.8
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 6.4e-24 114.4 128 52.3
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.3e-24 114.0 123 56.1
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 8.3e-24 114.0 130 53.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 8.3e-24 114.0 129 54.3
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.1e-23 113.6 125 52.0
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.9e-23 112.8 132 50.0
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 2.4e-23 112.5 129 54.3
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.4e-23 112.5 129 53.5
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 3.2e-23 112.1 138 52.9
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 3.2e-23 112.1 130 52.3
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 4.1e-23 111.7 127 53.5
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.1e-23 111.7 134 48.5
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 9.2e-23 110.5 135 48.1
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.6e-22 109.8 126 54.0
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.0e-22 109.4 127 53.5
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.0e-22 109.4 134 49.3
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 4.6e-22 108.2 127 53.5
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.6e-22 108.2 124 52.4
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 6.0e-22 107.8 127 51.2
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 7.8e-22 107.5 129 51.9
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 7.8e-22 107.5 127 52.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.3e-21 106.7 130 50.8
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.3e-21 106.7 116 51.7
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 1.7e-21 106.3 129 48.8
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.7e-21 106.3 110 54.5
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.3e-21 105.9 136 49.3
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.3e-21 105.9 129 48.8
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.3e-21 105.9 124 47.6
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.0e-21 105.5 125 52.8
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.9e-21 105.1 123 51.2
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 5.0e-21 104.8 129 47.3
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 8.6e-21 104.0 134 50.7
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.1e-20 103.6 129 48.1
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.1e-20 103.6 129 49.6
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.5e-20 103.2 137 46.0
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.5e-20 103.2 89 58.4
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.9e-20 102.8 123 50.4
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 2.5e-20 102.4 132 50.8
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.3e-20 102.1 132 49.2
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 3.3e-20 102.1 133 50.4
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 4.3e-20 101.7 90 55.6
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.3e-20 101.7 125 52.0
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 5.6e-20 101.3 122 50.0
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 5.6e-20 101.3 130 50.8
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.6e-20 101.3 129 50.4
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 7.3e-20 100.9 126 47.6
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 9.5e-20 100.5 129 50.4
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.2e-19 100.1 131 51.9
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-19 99.4 128 50.8
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 4.7e-19 98.2 124 51.6
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 4.7e-19 98.2 130 48.5
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 8.0e-19 97.4 129 50.4
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 8.0e-19 97.4 129 48.8
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.1e-18 97.1 85 61.2
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.4e-18 96.7 86 52.3
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.3e-18 95.9 127 48.8
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 5.2e-18 94.7 128 50.8
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 6.8e-18 94.4 126 50.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.2e-17 93.6 123 45.5
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.2e-17 93.6 122 48.4
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.0e-17 92.8 91 54.9
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 2.6e-17 92.4 129 42.6
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 3.4e-17 92.0 125 47.2
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 3.4e-17 92.0 85 57.6
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.4e-17 91.7 123 47.2
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.4e-17 91.7 123 42.3
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.4e-17 91.7 86 57.0
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 5.8e-17 91.3 129 48.1
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 7.5e-17 90.9 122 47.5
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 9.8e-17 90.5 122 45.9
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 9.8e-17 90.5 81 56.8
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.3e-16 90.1 125 43.2
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.3e-16 90.1 124 50.8
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.7e-16 89.7 129 43.4
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.7e-16 89.7 86 54.7
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.9e-16 89.0 125 46.4
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.9e-16 89.0 124 47.6
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.7e-16 88.6 90 53.3
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 3.7e-16 88.6 126 47.6
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 4.9e-16 88.2 123 43.1
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 8.3e-16 87.4 129 40.3
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 8.3e-16 87.4 129 40.3
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 8.3e-16 87.4 94 53.2
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 8.3e-16 87.4 94 53.2
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.3e-16 87.4 122 47.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.1e-15 87.0 125 44.0
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-15 86.7 124 49.2
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.9e-15 86.3 135 47.4
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.9e-15 86.3 122 47.5
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.9e-15 86.3 99 47.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.4e-15 85.9 130 43.1
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 4.1e-15 85.1 122 44.3
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.1e-15 85.1 126 40.5
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 4.1e-15 85.1 125 47.2
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 7.0e-15 84.3 85 49.4
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 7.0e-15 84.3 122 45.9
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 9.2e-15 84.0 131 43.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 9.2e-15 84.0 131 43.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 9.2e-15 84.0 131 43.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 9.2e-15 84.0 131 43.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 9.2e-15 84.0 121 43.0
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.2e-14 83.6 124 41.9
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.2e-14 83.6 90 50.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 1.2e-14 83.6 90 51.1
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.1e-14 82.8 130 43.8
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 2.7e-14 82.4 101 44.6
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 3.5e-14 82.0 92 50.0
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 3.5e-14 82.0 123 39.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 4.6e-14 81.6 123 41.5
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 4.6e-14 81.6 119 42.9
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 7.8e-14 80.9 123 41.5
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 7.8e-14 80.9 133 45.1
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 7.8e-14 80.9 124 41.9
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-13 80.5 123 42.3
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.0e-13 80.5 127 42.5
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-13 80.1 123 41.5
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-13 80.1 120 41.7
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.3e-13 80.1 120 41.7
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.7e-13 79.7 123 43.9
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.7e-13 79.7 127 44.9
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 3.9e-13 78.6 123 40.7
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.9e-13 78.6 122 43.4
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.9e-13 78.6 132 43.2
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 6.6e-13 77.8 122 40.2
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 8.6e-13 77.4 123 40.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 8.6e-13 77.4 123 40.7
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 8.6e-13 77.4 123 41.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.6e-13 77.4 122 45.1
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 8.6e-13 77.4 123 46.3
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 8.6e-13 77.4 126 46.0
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.1e-12 77.0 86 52.3
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.5e-12 76.6 89 48.3
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.9e-12 76.3 105 45.7
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.5e-12 75.9 123 39.8
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 3.3e-12 75.5 115 46.1
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.3e-12 75.5 135 43.7
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.3e-12 74.3 126 45.2
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-11 73.6 127 38.6
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.2e-11 73.6 86 40.7
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 2.8e-11 72.4 131 41.2
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 3.6e-11 72.0 141 40.4
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 4.7e-11 71.6 124 44.4
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 8.1e-11 70.9 133 40.6
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-10 70.5 127 41.7
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 108 38.9
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 122 44.3
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.1e-10 68.9 115 43.5
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.0e-10 68.6 80 48.8
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.0e-10 68.6 134 38.1
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.0e-10 68.6 87 42.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.2e-10 68.2 92 43.5
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.8e-10 67.8 114 40.4
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.8e-10 67.8 122 41.8
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-09 67.0 126 38.9
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.2e-09 67.0 90 46.7
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.5e-09 66.6 122 41.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 2.0e-09 66.2 84 46.4
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.0e-09 66.2 109 44.0
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 3.4e-09 65.5 85 42.4
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 3.7e-08 62.0 111 42.3
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 6.4e-08 61.2 106 40.6
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.2e-07 58.9 91 38.5
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.4e-07 58.2 91 37.4
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 1.2e-06 57.0 109 36.7
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.2e-06 57.0 90 37.8
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 2.7e-06 55.8 84 38.1
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.5e-06 55.5 52 50.0


User provided reference genes

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