Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p025537 Quercus lobata HOM05D009046 ORTHO05D010499 6.1e-67 257.3 126 100.0
QL09p042742 Quercus lobata HOM05D009046 ORTHO05D010499 4.9e-40 167.9 112 82.1
QL09p042668 Quercus lobata HOM05D009046 ORTHO05D010499 4.7e-35 151.4 96 78.1
QL09p042663 Quercus lobata HOM05D009046 ORTHO05D010499 8.1e-35 150.6 99 80.8
Cfa015893 Carpinus fangiana HOM05D009046 ORTHO05D010499 5.6e-28 127.9 111 63.1
QL09p042594 Quercus lobata HOM05D009046 ORTHO05D010499 8.4e-24 114.0 63 88.9
Thecc.04G174700 Theobroma cacao HOM05D009046 ORTHO05D010499 7.8e-22 107.5 98 53.1
Thecc.04G174900 Theobroma cacao HOM05D009046 ORTHO05D010499 1.5e-20 103.2 102 49.0
Thecc.04G174500 Theobroma cacao HOM05D009046 ORTHO05D010499 1.9e-20 102.8 102 49.0
Thecc.04G176200 Theobroma cacao HOM05D009046 ORTHO05D010499 2.1e-19 99.4 110 49.1
Cpa.g.sc3.422 Carica papaya HOM05D009046 ORTHO05D010499 2.4e-18 95.9 111 48.6
Cfa017052 Carpinus fangiana HOM05D009046 ORTHO05D010499 5.3e-18 94.7 87 54.0
Cpa.g.sc76.56 Carica papaya HOM05D009046 ORTHO05D010499 9.0e-18 94.0 103 48.5
COL.COLO4_20670 Corchorus olitorius HOM05D009046 ORTHO05D010499 2.0e-17 92.8 108 50.0
Atru.chr2.2398 Acer truncatum HOM05D009046 ORTHO05D010499 1.3e-16 90.1 97 49.5
Prupe.2G131500 Prunus persica HOM05D009046 ORTHO05D010499 1.3e-16 90.1 112 44.6
Prupe.2G131400 Prunus persica HOM05D009046 ORTHO05D010499 4.9e-16 88.2 110 42.7
Cpa.g.sc34.167 Carica papaya HOM05D009046 ORTHO05D010499 8.4e-16 87.4 99 45.5
Prupe.2G131600 Prunus persica HOM05D009046 ORTHO05D010499 8.4e-16 87.4 110 42.7
QL07p032500 Quercus lobata HOM05D011519 ORTHO05D010499 1.4e-15 86.7 64 62.5
Haze_21160 Corylus avellana HOM05D009046 ORTHO05D010499 5.4e-15 84.7 74 56.8
QL07p032484 Quercus lobata HOM05D009046 ORTHO05D010499 1.2e-14 83.6 64 60.9
COL.COLO4_33068 Corchorus olitorius HOM05D009046 ORTHO05D010499 2.1e-14 82.8 110 45.5
Cpa.g.c34620 Carica papaya HOM05D009046 ORTHO05D010499 1.7e-13 79.7 67 62.7
Prupe.8G072400 Prunus persica HOM05D011519 ORTHO05D010499 1.7e-13 79.7 96 43.8
COL.COLO4_33059 Corchorus olitorius HOM05D009046 ORTHO05D010499 3.9e-13 78.6 108 45.4
Manes.09G014201 Manihot esculenta HOM05D009046 ORTHO05D010499 3.9e-13 78.6 100 42.0
Manes.09G132801 Manihot esculenta HOM05D009046 ORTHO05D010499 1.1e-12 77.0 113 38.1
Potri.013G054600 Populus trichocarpa HOM05D009046 ORTHO05D010499 1.5e-12 76.6 72 55.6
Ciclev10023880m.g Citrus clementina HOM05D009046 ORTHO05D010499 4.3e-12 75.1 64 59.4
TAR633G0605 Trochodendron aralioides HOM05D012974 ORTHO05D012969 4.3e-12 75.1 99 45.5
Prupe.8G072300 Prunus persica HOM05D011519 ORTHO05D010499 5.6e-12 74.7 105 45.7
PGR119G0114 Punica granatum HOM05D009046 ORTHO05D010499 8.1e-11 70.9 108 40.7
Cpa.g.sc3.420 Carica papaya HOM05D009046 ORTHO05D010499 2.4e-10 69.3 79 44.3
TAR613G0003 Trochodendron aralioides HOM05D000057 ORTHO05D010499 4.0e-10 68.6 97 41.2
Nn2g10332 Nelumbo nucifera HOM05D009046 ORTHO05D010499 5.3e-10 68.2 110 36.4
Cpa.g.sc48.221 Carica papaya HOM05D009046 ORTHO05D010499 9.0e-10 67.4 64 53.1
FvH4_6g10090 Fragaria vesca HOM05D019556 ORTHO05D017924 2.6e-09 65.9 89 40.4
FAN09G0582 Fragaria x ananassa HOM05D011519 ORTHO05D010499 2.6e-09 65.9 98 37.8
FAN14G4714 Fragaria x ananassa HOM05D019556 ORTHO05D017924 2.6e-09 65.9 89 40.4
Manes.09G012601 Manihot esculenta HOM05D009046 ORTHO05D010499 3.4e-09 65.5 76 40.8
TAR613G0002 Trochodendron aralioides HOM05D000057 ORTHO05D010499 7.6e-09 64.3 97 40.2
Haze_19035 Corylus avellana HOM05D000204 ORTHO05D008753 9.9e-09 63.9 75 38.7
FAN25G3136 Fragaria x ananassa HOM05D041136 ORTHO05D010499 9.9e-09 63.9 71 49.3
FAN09G3689 Fragaria x ananassa HOM05D011519 ORTHO05D010499 2.2e-08 62.8 97 38.1
FAN11G1022 Fragaria x ananassa HOM05D041136 ORTHO05D010499 3.8e-08 62.0 73 45.2
COL.COLO4_08218 Corchorus olitorius HOM05D017127 ORTHO05D019068 4.9e-08 61.6 69 43.5
FAN02G1285 Fragaria x ananassa HOM05D011519 ORTHO05D010499 8.4e-08 60.8 99 43.4
TAR633G0276 Trochodendron aralioides HOM05D012974 ORTHO05D012969 8.4e-08 60.8 107 37.4
TAR636G3259 Trochodendron aralioides HOM05D000057 ORTHO05D010499 1.9e-07 59.7 104 35.6
Lj3g0010882 Lotus japonicus HOM05D000057 ORTHO05D000021 3.2e-07 58.9 77 39.0
FvH4_6g21652 Fragaria vesca HOM05D011519 ORTHO05D010499 4.2e-07 58.5 98 40.8
FAN14G2716 Fragaria x ananassa HOM05D011519 ORTHO05D010499 4.2e-07 58.5 99 41.4
CiPaw.16G102900 Carya illinoinensis HOM05D000204 ORTHO05D008753 5.5e-07 58.2 75 37.3
LjContig00016g0002737 Lotus japonicus HOM05D000057 ORTHO05D000021 7.1e-07 57.8 70 38.6
LjContig00016g0014610 Lotus japonicus HOM05D000057 ORTHO05D000021 7.1e-07 57.8 68 41.2
LjContig00095g0014321 Lotus japonicus HOM05D000057 ORTHO05D000021 7.1e-07 57.8 68 41.2
LjContig00016g0028090 Lotus japonicus HOM05D000057 ORTHO05D000021 9.3e-07 57.4 67 38.8
LjContig00016g0005501 Lotus japonicus HOM05D000057 ORTHO05D000021 1.2e-06 57.0 68 39.7
LjContig00095g0025470 Lotus japonicus HOM05D000057 ORTHO05D000021 1.2e-06 57.0 68 39.7
PGSC0003DMG400020701 Solanum tuberosum HOM05D000204 ORTHO05D008753 1.2e-06 57.0 91 30.8
Aqoxy7G02695 Aquilegia oxysepala HOM05D000204 ORTHO05D008753 1.6e-06 56.6 104 32.7
arahy.Tifrunner.gnm1.ann1.7DAE0N Arachis hypogaea HOM05D000057 ORTHO05D000021 1.6e-06 56.6 73 38.4
arahy.Tifrunner.gnm1.ann1.QB1Z5V Arachis hypogaea HOM05D000057 ORTHO05D000021 1.6e-06 56.6 73 38.4
FAN08G0905 Fragaria x ananassa HOM05D011519 ORTHO05D010499 1.6e-06 56.6 98 35.7
Nn8g41046 Nelumbo nucifera HOM05D000204 ORTHO05D008753 1.6e-06 56.6 98 31.6
TAR613G0001 Trochodendron aralioides HOM05D009046 ORTHO05D010499 1.6e-06 56.6 74 41.9
FvH4_5g32781 Fragaria vesca HOM05D011519 ORTHO05D010499 2.1e-06 56.2 101 34.7
FAN08G0044 Fragaria x ananassa HOM05D011519 ORTHO05D010499 2.1e-06 56.2 101 34.7
SEGI_31288 Sequoiadendron giganteum HOM05D000204 ORTHO05D008753 2.1e-06 56.2 87 37.9
Ca_20477_v3 Cicer arietinum L. HOM05D000057 ORTHO05D000021 2.7e-06 55.8 72 36.1
Peaxi162Scf00889g00021 Petunia axillaris HOM05D000204 ORTHO05D008753 2.7e-06 55.8 81 35.8
arahy.Tifrunner.gnm1.ann1.VR50FW Arachis hypogaea HOM05D000057 ORTHO05D000021 3.5e-06 55.5 76 35.5
LjContig00016g0018390 Lotus japonicus HOM05D000057 ORTHO05D000021 3.5e-06 55.5 68 39.7
Peaxi162Scf00128g01631 Petunia axillaris HOM05D000204 ORTHO05D002693 3.5e-06 55.5 104 32.7
arahy.Tifrunner.gnm1.ann1.R6N347 Arachis hypogaea HOM05D000057 ORTHO05D000021 4.6e-06 55.1 70 37.1
arahy.Tifrunner.gnm1.ann1.RL6C8W Arachis hypogaea HOM05D000057 ORTHO05D000021 4.6e-06 55.1 70 35.7
Manes.02G193550 Manihot esculenta HOM05D000057 ORTHO05D000021 4.6e-06 55.1 72 37.5
Medtr3g084160 Medicago truncatula HOM05D000057 ORTHO05D000021 4.6e-06 55.1 67 40.3
arahy.Tifrunner.gnm1.ann1.KEU1LS Arachis hypogaea HOM05D000057 ORTHO05D000021 6.0e-06 54.7 70 37.1
arahy.Tifrunner.gnm1.ann1.T671A1 Arachis hypogaea HOM05D000057 ORTHO05D000021 6.0e-06 54.7 71 38.0
COL.COLO4_08962 Corchorus olitorius HOM05D000057 ORTHO05D000021 6.0e-06 54.7 76 35.5
arahy.Tifrunner.gnm1.ann1.8RJL3Y Arachis hypogaea HOM05D000057 ORTHO05D000021 7.9e-06 54.3 66 37.9
arahy.Tifrunner.gnm1.ann1.DWQ8LQ Arachis hypogaea HOM05D000057 ORTHO05D000021 7.9e-06 54.3 89 31.5
arahy.Tifrunner.gnm1.ann1.EK668R Arachis hypogaea HOM05D000057 ORTHO05D000021 7.9e-06 54.3 70 35.7
arahy.Tifrunner.gnm1.ann1.TX5T3X Arachis hypogaea HOM05D000057 ORTHO05D000021 7.9e-06 54.3 66 37.9
arahy.Tifrunner.gnm1.ann1.UM33GY Arachis hypogaea HOM05D000057 ORTHO05D000021 7.9e-06 54.3 70 35.7
arahy.Tifrunner.gnm1.ann1.WK9SX4 Arachis hypogaea HOM05D000057 ORTHO05D000021 7.9e-06 54.3 70 35.7
Ca_15425_v3 Cicer arietinum L. HOM05D000057 ORTHO05D000021 7.9e-06 54.3 67 38.8
Duzib052G0015 Durio zibethinus HOM05D000057 ORTHO05D000021 7.9e-06 54.3 86 37.2
Lj3g0007191 Lotus japonicus HOM05D000057 ORTHO05D000021 7.9e-06 54.3 68 36.8
LjContig00016g0004047 Lotus japonicus HOM05D000057 ORTHO05D000021 7.9e-06 54.3 69 34.8
Medtr4g072240 Medicago truncatula HOM05D000057 ORTHO05D000021 7.9e-06 54.3 67 40.3
Medtr4g072300 Medicago truncatula HOM05D000057 ORTHO05D000021 7.9e-06 54.3 67 40.3
Medtr4g072330 Medicago truncatula HOM05D000057 ORTHO05D000021 7.9e-06 54.3 70 38.6
Medtr4g072490 Medicago truncatula HOM05D000057 ORTHO05D000021 7.9e-06 54.3 69 40.6
Nitab4.5_0000833g0080 Nicotiana tabacum HOM05D000204 ORTHO05D008753 7.9e-06 54.3 85 32.9
Phvul.011G131500 Phaseolus vulgaris HOM05D000057 ORTHO05D000021 7.9e-06 54.3 74 35.1
Phvul.011G133100 Phaseolus vulgaris HOM05D000057 ORTHO05D000021 7.9e-06 54.3 67 37.3
Phvul.011G133800 Phaseolus vulgaris HOM05D000057 ORTHO05D000021 7.9e-06 54.3 67 37.3
Solyc01g110907.1 Solanum lycopersicum HOM05D000057 ORTHO05D000021 7.9e-06 54.3 69 40.6
Sopen07g005490 Solanum pennellii HOM05D000204 ORTHO05D008753 7.9e-06 54.3 91 29.7


User provided reference genes

Program Settings