Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 1.6e-122 443.0 254 100.0
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 1.1e-70 270.8 253 59.7
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 3.1e-70 269.2 254 61.4
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 3.0e-65 252.7 268 56.7
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 7.0e-54 214.9 248 52.0
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.0e-52 211.1 182 63.2
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.3e-52 210.7 236 50.0
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 1.5e-51 207.2 253 50.6
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 3.3e-51 206.1 256 48.8
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 4.3e-51 205.7 246 48.4
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 5.6e-51 205.3 247 48.2
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 3.6e-50 202.6 239 56.5
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 8.0e-50 201.4 261 48.3
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 8.0e-50 201.4 252 47.2
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 5.2e-49 198.7 224 50.4
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 6.8e-49 198.4 248 48.4
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 2.0e-48 196.8 255 48.2
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 3.4e-48 196.1 251 45.4
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 9.8e-48 194.5 171 62.6
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 2.9e-47 193.0 231 46.3
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 3.7e-47 192.6 241 46.1
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 3.7e-47 192.6 233 48.1
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.1e-46 191.0 166 60.8
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.4e-46 190.7 250 48.8
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.9e-46 190.3 175 58.3
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 2.4e-46 189.9 181 54.7
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 4.1e-46 189.1 232 48.3
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 1.2e-45 187.6 255 45.5
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 7.8e-45 184.9 245 48.2
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 2.3e-44 183.3 242 50.0
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.9e-44 182.6 259 44.8
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 8.6e-44 181.4 173 58.4
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.1e-43 181.0 260 48.8
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.1e-43 181.0 209 48.8
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.5e-43 180.6 257 49.4
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.5e-43 180.6 140 63.6
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 1.9e-43 180.3 174 59.2
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 2.5e-43 179.9 171 57.3
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 2.1e-42 176.8 135 63.0
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.1e-41 174.5 146 58.2
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.4e-41 174.1 248 50.4
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 2.0e-40 170.2 238 42.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 2.0e-40 170.2 134 62.7
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 3.4e-40 169.5 176 53.4
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 3.4e-40 169.5 167 52.1
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 4.4e-40 169.1 155 58.7
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 5.8e-40 168.7 243 48.6
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 1.3e-39 167.5 147 60.5
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.3e-39 167.5 171 55.6
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.7e-39 167.2 156 57.7
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.7e-39 167.2 156 57.7
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 3.7e-39 166.0 156 57.1
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 3.7e-39 166.0 175 53.7
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 4.9e-39 165.6 164 53.0
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 4.9e-39 165.6 180 50.6
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 6.4e-39 165.2 144 56.9
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 8.3e-39 164.9 171 52.0
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.4e-38 164.1 156 56.4
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 1.4e-38 164.1 128 64.1
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 1.9e-38 163.7 175 53.1
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.4e-38 163.3 151 60.3
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 3.2e-38 162.9 245 45.7
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 4.1e-38 162.5 232 43.1
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 7.1e-38 161.8 155 58.1
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 2.1e-37 160.2 151 58.3
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 2.7e-37 159.8 233 45.1
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 3.5e-37 159.5 176 53.4
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 4.6e-37 159.1 180 53.3
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.3e-36 156.8 177 52.0
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 5.6e-35 152.1 171 49.1
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 5.6e-35 152.1 137 54.7
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.1e-34 150.2 170 50.0
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 3.6e-34 149.4 173 47.4
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 4.7e-34 149.1 156 53.2
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 9.9e-32 141.4 250 41.2
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.7e-28 130.6 118 56.8
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 2.3e-28 130.2 176 41.5
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.8e-26 123.2 169 39.1
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.2e-24 117.9 151 42.4
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 2.6e-24 116.7 155 41.3
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 3.4e-24 116.3 154 41.6
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 3.4e-24 116.3 133 45.1
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 5.8e-24 115.5 106 54.7
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 7.6e-24 115.2 140 41.4
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 9.9e-24 114.8 146 40.4
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.3e-23 114.4 144 41.0
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.3e-23 114.4 165 38.2
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.7e-23 114.0 179 39.1
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 2.2e-23 113.6 156 39.1
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 2.2e-23 113.6 144 41.7
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 3.8e-23 112.8 133 42.1
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 3.8e-23 112.8 133 42.1
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 8.4e-23 111.7 100 56.0
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 8.4e-23 111.7 145 40.7
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.4e-22 110.9 144 40.3
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.4e-22 110.2 130 41.5
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.4e-22 110.2 127 42.5
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 7.1e-22 108.6 131 40.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 9.3e-22 108.2 124 41.9
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.1e-21 107.1 160 40.0
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 2.7e-21 106.7 142 38.0
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.7e-21 106.7 131 40.5
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 3.5e-21 106.3 154 39.6
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 4.6e-21 105.9 139 36.0
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 6.0e-21 105.5 161 38.5
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 7.8e-21 105.1 141 37.6
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 7.8e-21 105.1 142 37.3
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 7.8e-21 105.1 158 39.2
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 2.3e-20 103.6 139 36.7
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 2.3e-20 103.6 131 41.2
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 3.0e-20 103.2 131 38.2
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 3.9e-20 102.8 155 37.4
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 8.7e-20 101.7 171 33.9
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 8.7e-20 101.7 171 33.9
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 1.1e-19 101.3 155 36.8
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.5e-19 100.9 156 35.3
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.9e-19 100.5 78 67.9
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.9e-19 100.5 156 36.5
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.3e-19 99.4 131 40.5
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 4.3e-19 99.4 146 37.7
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 5.6e-19 99.0 143 36.4
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 7.3e-19 98.6 135 38.5
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 7.3e-19 98.6 135 38.5
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-18 97.8 131 38.9
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.6e-18 97.4 167 33.5
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.6e-18 97.4 154 36.4
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.6e-18 97.4 142 36.6
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.1e-18 97.1 117 41.0
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 3.6e-18 96.3 131 38.2
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 8.1e-18 95.1 121 38.0
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-17 94.7 159 37.7
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.1e-17 94.7 159 37.7
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.4e-17 94.4 159 37.7
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.4e-17 94.4 159 37.7
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.4e-17 94.4 159 37.7
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.8e-17 94.0 126 38.1
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.8e-17 94.0 131 37.4
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.1e-17 93.2 96 43.8
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 9.0e-17 91.7 137 37.2
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.6e-16 90.1 122 36.1
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 4.5e-16 89.4 123 39.0
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 7.6e-16 88.6 158 32.9
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 9.9e-16 88.2 141 35.5
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 9.9e-16 88.2 133 36.1
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 9.9e-16 88.2 133 36.1
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 9.9e-16 88.2 149 37.6
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.7e-15 87.4 130 33.1
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.9e-15 86.7 131 36.6
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.9e-15 85.9 167 29.3
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 8.4e-15 85.1 118 36.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.4e-14 83.6 121 33.9
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 1.8e-12 77.4 87 36.8
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 3.9e-12 76.3 91 56.0
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 2.5e-11 73.6 138 33.3
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.6e-10 70.9 90 37.8
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 2.8e-10 70.1 154 29.2
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 6.2e-10 68.9 97 37.1
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.1e-09 68.2 60 50.0
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 3.1e-09 66.6 120 34.2
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 1.5e-08 64.3 165 26.1
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 3.4e-08 63.2 83 41.0
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 2.9e-07 60.1 170 27.1
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 6.4e-07 58.9 184 28.3
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 6.4e-07 58.9 164 26.8
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 7.1e-06 55.5 118 28.8


User provided reference genes

Program Settings