Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 5.6e-289 996.9 496 100.0
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.3e-101 373.6 221 82.8
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.6e-100 370.2 221 81.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 3.3e-100 369.8 277 68.6
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.2e-99 367.1 221 81.0
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.8e-99 366.7 221 80.1
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 2.0e-97 360.5 221 77.8
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.5e-97 359.4 309 60.8
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 4.5e-97 359.4 218 80.3
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.0e-96 358.2 222 79.3
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 2.9e-96 356.7 222 78.8
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 9.4e-95 351.7 222 77.9
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 9.4e-95 351.7 223 76.7
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 4.7e-94 349.4 279 65.6
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.1e-92 344.7 215 77.7
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.1e-92 344.7 261 64.4
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.0e-92 344.0 223 75.3
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.0e-92 344.0 276 61.6
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 7.4e-92 342.0 216 76.4
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 6.3e-91 339.0 221 75.1
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.4e-90 337.8 276 60.9
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.8e-90 337.4 279 64.2
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 4.1e-90 336.3 216 73.6
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.0e-90 335.5 221 73.3
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.0e-90 335.5 221 73.3
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 9.1e-90 335.1 216 74.5
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.6e-89 334.3 216 73.1
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 2.0e-89 334.0 215 74.4
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 3.5e-89 333.2 222 69.4
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.9e-89 332.4 221 71.9
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 5.9e-89 332.4 215 72.1
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.9e-89 332.4 222 72.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 7.7e-89 332.0 215 72.6
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.3e-88 331.3 236 71.2
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-88 330.5 222 72.1
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-88 330.5 216 73.6
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.9e-88 330.1 216 73.6
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.8e-88 329.7 221 70.6
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.5e-87 327.8 223 73.5
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.5e-87 327.0 216 73.1
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 2.5e-87 327.0 215 71.6
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.2e-87 326.6 221 70.6
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 3.2e-87 326.6 225 72.4
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 7.2e-87 325.5 223 71.3
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 7.2e-87 325.5 223 71.3
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.2e-86 324.7 228 68.9
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.7e-86 323.6 222 70.3
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 6.1e-86 322.4 221 67.9
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 4.0e-85 319.7 215 73.5
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 5.2e-85 319.3 221 68.8
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 6.7e-85 318.9 215 73.0
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 2.0e-84 317.4 215 68.4
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.0e-84 317.4 225 67.6
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 2.0e-84 317.4 280 60.4
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 2.0e-84 317.4 215 68.4
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 2.6e-84 317.0 222 70.3
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 9.7e-84 315.1 221 68.3
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 6.3e-83 312.4 215 67.4
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.4e-82 311.2 221 68.8
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.8e-82 310.8 215 67.9
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 7.0e-82 308.9 221 68.3
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 9.1e-82 308.5 236 65.3
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 9.1e-82 308.5 292 58.6
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 9.1e-82 308.5 215 69.8
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 7.7e-81 305.4 243 65.0
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.3e-80 304.7 215 68.8
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.7e-80 304.3 277 59.2
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 2.9e-80 303.5 271 57.6
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.8e-80 303.1 227 65.6
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.5e-79 301.2 223 66.4
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 3.2e-79 300.1 227 63.9
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 3.2e-79 300.1 221 65.2
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 4.2e-79 299.7 221 65.2
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 7.2e-79 298.9 221 65.2
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.2e-78 298.1 216 68.1
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.6e-78 297.7 217 65.0
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.6e-78 297.7 276 57.2
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.1e-78 297.4 221 66.1
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 2.7e-78 297.0 222 64.9
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.7e-78 297.0 215 67.0
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 6.1e-78 295.8 215 67.4
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 4.0e-77 293.1 325 50.8
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 6.8e-77 292.4 216 64.8
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 8.8e-77 292.0 227 63.9
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.2e-76 291.6 224 65.2
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.6e-76 290.4 221 66.5
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 4.4e-76 289.7 216 66.2
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 4.4e-76 289.7 216 66.2
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 5.7e-76 289.3 325 49.8
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 5.7e-76 289.3 284 54.6
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 7.5e-76 288.9 215 64.7
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 4.1e-74 283.1 221 59.3
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.7e-73 280.4 221 58.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 5.9e-73 279.3 226 61.9
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 7.7e-73 278.9 262 55.3
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.3e-72 278.1 224 60.7
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.5e-71 273.9 260 55.8
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.0e-69 268.5 223 59.6
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.3e-69 267.3 217 64.1
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.0e-69 266.5 217 64.1
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 6.8e-69 265.8 223 60.5
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.5e-68 264.6 221 59.7
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.4e-68 263.5 183 72.7
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.9e-67 259.6 223 64.1
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.1e-66 258.5 216 59.7
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.4e-66 258.1 247 57.5
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 4.1e-66 256.5 151 80.1
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.2e-65 255.0 259 52.5
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 1.6e-65 254.6 222 58.6
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 4.5e-65 253.1 218 58.3
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 3.8e-64 250.0 215 56.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 8.6e-64 248.8 219 55.7
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 5.6e-63 246.1 247 57.1
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.1e-62 244.2 243 52.7
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 9.2e-58 228.8 220 50.9
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.6e-57 228.0 260 47.3
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.0e-57 227.6 184 67.4
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 6.6e-56 222.6 147 72.1
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 8.6e-56 222.2 285 49.1
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.3e-53 214.2 223 52.0
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 8.9e-53 212.2 163 66.9
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.5e-52 211.5 127 78.0
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.9e-51 207.2 151 63.6
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 7.0e-50 202.6 152 63.8
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 2.3e-45 187.6 215 45.1
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.1e-41 174.5 153 58.2
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.1e-38 164.5 121 66.9
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 4.0e-37 160.2 159 51.6
QL12p011078 Quercus lobata HOM05D000432 ORTHO05D000002 9.9e-36 155.6 140 60.0
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.7e-35 154.8 119 61.3
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.2e-35 154.5 151 52.3
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.9e-34 151.4 138 49.3
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.7e-33 147.5 120 63.3
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.7e-32 144.8 102 70.6
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 2.8e-30 137.5 103 68.0
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.4e-26 125.2 217 37.3
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.2e-26 123.6 69 81.2
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 8.7e-24 115.9 180 36.1
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 8.7e-24 115.9 96 65.6
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.9e-23 114.8 175 34.9
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 5.6e-23 113.2 181 38.1
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.1e-21 109.0 90 60.0
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 1.8e-21 108.2 110 50.0
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 3.1e-21 107.5 74 68.9
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 6.9e-21 106.3 74 68.9
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 6.9e-21 106.3 74 68.9
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.4e-20 104.0 72 66.7
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 9.9e-20 102.4 68 70.6
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.4e-18 98.6 77 61.0
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.4e-18 97.8 197 34.5
QL01p002857 Quercus lobata HOM05D000240 ORTHO05D003213 1.6e-17 95.1 68 76.5
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 4.5e-12 77.0 98 46.9
QL07p031531 Quercus lobata HOM05D000115 ORTHO05D000464 1.9e-10 71.6 67 61.2
QL02p027674 Quercus lobata HOM05D000289 ORTHO05D337668 5.5e-10 70.1 67 56.7
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.6e-09 68.6 37 78.4
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.0e-08 65.9 41 75.6
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.3e-08 65.5 43 67.4
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 3.0e-08 64.3 40 75.0
QL10p040115 Quercus lobata HOM05D000004 ORTHO05D000002 5.1e-08 63.5 138 33.3
Hma1.2p1_0812F.1_g222280 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 6.7e-08 63.2 111 36.0
Manes.03G138751 Manihot esculenta HOM05D000004 ORTHO05D000002 1.9e-07 61.6 91 38.5
ATR0815G060 Amborella trichopoda HOM05D000004 ORTHO05D000002 2.5e-07 61.2 146 26.0
Manes.11G130716 Manihot esculenta HOM05D000004 ORTHO05D000002 5.6e-07 60.1 129 28.7
Manes.08G059801 Manihot esculenta HOM05D000004 ORTHO05D000002 2.1e-06 58.2 129 28.7
QL02p059512 Quercus lobata HOM05D000004 ORTHO05D000002 2.8e-06 57.8 41 56.1
TAR643G0001 Trochodendron aralioides HOM05D000004 ORTHO05D000002 2.8e-06 57.8 121 29.8
TAR481G0005 Trochodendron aralioides HOM05D000004 ORTHO05D000002 3.7e-06 57.4 58 39.7
Manes.17G118357 Manihot esculenta HOM05D000004 ORTHO05D000002 4.8e-06 57.0 133 30.1
Atru.chr2.2472 Acer truncatum HOM05D000004 ORTHO05D000002 6.2e-06 56.6 41 58.5
Thhalv10012141m.g Eutrema salsugineum HOM05D000004 ORTHO05D000002 8.2e-06 56.2 141 31.9
TPR.G22228 Trifolium pratense HOM05D000004 ORTHO05D000002 8.2e-06 56.2 96 38.5


User provided reference genes

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