Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 7.9e-39 163.3 83 100.0
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.5e-16 89.4 58 77.6
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 7.2e-16 87.0 58 77.6
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.1e-15 85.5 58 75.9
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 6.1e-15 84.0 58 75.9
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 8.0e-15 83.6 58 75.9
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.0e-14 83.2 58 72.4
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.0e-14 83.2 58 74.1
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.0e-14 83.2 56 73.2
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.4e-14 82.8 56 75.0
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.8e-14 82.4 58 70.7
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.8e-14 82.4 58 70.7
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.8e-14 82.4 58 69.0
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 3.0e-14 81.6 58 72.4
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 3.0e-14 81.6 56 73.2
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 4.0e-14 81.3 58 69.0
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.0e-14 81.3 58 67.2
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.0e-14 81.3 58 67.2
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.0e-14 81.3 58 72.4
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 4.0e-14 81.3 58 69.0
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 4.0e-14 81.3 58 70.7
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.2e-14 80.9 49 79.6
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 5.2e-14 80.9 58 72.4
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 5.2e-14 80.9 58 70.7
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 5.2e-14 80.9 56 69.6
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 5.2e-14 80.9 58 69.0
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.8e-14 80.1 58 67.2
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 8.8e-14 80.1 58 69.0
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.2e-13 79.7 58 69.0
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 1.5e-13 79.3 58 69.0
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 2.0e-13 79.0 56 69.6
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.4e-13 78.2 58 67.2
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.4e-13 77.8 47 76.6
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.4e-13 77.8 58 69.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.4e-13 77.8 58 69.0
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 5.7e-13 77.4 58 67.2
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 5.7e-13 77.4 56 66.1
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.7e-13 77.4 56 66.1
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.7e-13 77.4 56 66.1
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 5.7e-13 77.4 58 65.5
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 5.7e-13 77.4 56 66.1
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 5.7e-13 77.4 58 67.2
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 7.5e-13 77.0 52 76.9
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 7.5e-13 77.0 58 70.7
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 7.5e-13 77.0 56 69.6
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-12 76.3 59 69.5
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-12 76.3 59 69.5
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.3e-12 76.3 58 67.2
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.3e-12 76.3 56 67.9
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.3e-12 76.3 58 63.8
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.7e-12 75.9 58 67.2
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.7e-12 75.9 56 67.9
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.7e-12 75.9 57 70.2
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 2.2e-12 75.5 56 64.3
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.2e-12 75.5 58 67.2
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 2.2e-12 75.5 58 65.5
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.8e-12 75.1 59 69.5
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.8e-12 75.1 48 75.0
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 2.8e-12 75.1 58 62.1
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 3.7e-12 74.7 58 67.2
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 3.7e-12 74.7 56 62.5
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 8.3e-12 73.6 58 63.8
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 8.3e-12 73.6 58 63.8
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 8.3e-12 73.6 59 67.8
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.1e-11 73.2 58 63.8
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.1e-11 73.2 50 68.0
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.4e-11 72.8 58 65.5
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.4e-11 72.8 48 72.9
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.4e-11 72.8 48 72.9
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.4e-11 72.8 56 66.1
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.4e-11 72.8 58 67.2
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.8e-11 72.4 58 65.5
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.8e-11 72.4 73 52.1
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.4e-11 72.0 56 64.3
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 2.4e-11 72.0 59 66.1
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 2.4e-11 72.0 48 75.0
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.1e-11 71.6 56 64.3
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.1e-11 71.6 56 64.3
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 4.1e-11 71.2 56 64.3
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.1e-11 71.2 50 72.0
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 4.1e-11 71.2 59 62.7
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 5.4e-11 70.9 58 63.8
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 5.4e-11 70.9 49 65.3
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 5.4e-11 70.9 58 62.1
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 5.4e-11 70.9 59 66.1
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 5.4e-11 70.9 58 60.3
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-10 69.7 54 66.7
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.6e-10 69.3 57 64.9
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.6e-10 69.3 57 64.9
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 2.0e-10 68.9 58 60.3
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 2.0e-10 68.9 58 62.1
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 3.5e-10 68.2 56 62.5
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.5e-10 68.2 46 69.6
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.5e-10 68.2 46 69.6
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 4.5e-10 67.8 58 62.1
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 4.5e-10 67.8 58 62.1
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 4.5e-10 67.8 56 60.7
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 4.5e-10 67.8 56 60.7
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 4.5e-10 67.8 56 58.9
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.5e-10 67.8 50 70.0
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.5e-10 67.8 47 72.3
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 5.9e-10 67.4 50 60.0
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 7.7e-10 67.0 56 60.7
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 1.0e-09 66.6 50 70.0
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.0e-09 66.6 57 64.9
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.7e-09 65.9 51 62.7
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.2e-09 65.5 58 60.3
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.2e-09 65.5 58 60.3
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 2.2e-09 65.5 57 61.4
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 3.8e-09 64.7 58 56.9
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 3.8e-09 64.7 58 56.9
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 3.8e-09 64.7 58 56.9
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 3.8e-09 64.7 58 56.9
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 5.0e-09 64.3 57 63.2
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 6.5e-09 63.9 58 56.9
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 8.5e-09 63.5 47 63.8
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.9e-08 62.4 57 59.6
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.5e-08 62.0 48 70.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 3.2e-08 61.6 58 55.2
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 7.2e-08 60.5 56 53.6
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 7.2e-08 60.5 56 53.6
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 9.4e-08 60.1 57 57.9
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 9.4e-08 60.1 56 53.6
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.2e-07 59.7 56 53.6
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.7e-07 58.5 56 48.2
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.7e-07 58.5 56 46.4
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 6.1e-07 57.4 56 46.4
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 6.1e-07 57.4 57 57.9
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 8.0e-07 57.0 52 55.8
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.0e-06 56.6 48 56.2


User provided reference genes

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