Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 7.5e-53 211.5 183 100.0
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.7e-18 96.7 143 65.7
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.7e-18 96.7 143 55.2
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 3.5e-18 96.3 141 54.6
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 4.6e-18 95.9 141 56.7
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 7.9e-18 95.1 141 66.0
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.8e-17 94.0 143 60.1
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 3.9e-17 92.8 141 73.8
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 3.9e-17 92.8 141 52.5
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 8.7e-17 91.7 141 62.4
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.1e-16 91.3 141 56.0
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.1e-16 91.3 141 58.2
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.1e-16 91.3 153 41.8
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.1e-16 91.3 141 57.4
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 1.5e-16 90.9 141 78.7
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 1.5e-16 90.9 141 78.7
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.5e-16 90.9 141 56.7
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.5e-16 90.1 142 69.0
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 5.6e-16 89.0 142 66.2
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 2.1e-15 87.0 142 55.6
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 2.1e-15 87.0 142 42.3
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 2.8e-15 86.7 141 61.0
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 6.2e-15 85.5 145 63.4
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 6.2e-15 85.5 141 72.3
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 8.1e-15 85.1 41 87.8
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.1e-14 84.7 146 40.4
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.8e-14 84.0 144 65.3
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 3.1e-14 83.2 145 62.8
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 3.1e-14 83.2 142 38.0
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 9.0e-14 81.6 39 87.2
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 9.0e-14 81.6 37 91.9
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.5e-13 80.9 39 87.2
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 2.0e-13 80.5 147 76.9
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 2.0e-13 80.5 144 38.2
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 2.0e-13 80.5 145 49.0
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 3.4e-13 79.7 145 53.8
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 4.5e-13 79.3 37 91.9
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.5e-13 79.3 37 91.9
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.5e-13 79.3 37 91.9
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 4.5e-13 79.3 37 91.9
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 4.5e-13 79.3 40 87.5
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 4.5e-13 79.3 37 91.9
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.8e-13 79.0 39 82.1
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 7.6e-13 78.6 37 89.2
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.9e-13 78.2 41 80.5
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 9.9e-13 78.2 147 63.9
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 9.9e-13 78.2 40 87.5
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.3e-12 77.8 37 89.2
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.7e-12 77.4 141 48.9
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.2e-12 77.0 147 43.5
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.2e-12 77.0 37 83.8
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 2.2e-12 77.0 34 94.1
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 2.2e-12 77.0 146 50.7
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 2.2e-12 77.0 146 51.4
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 2.2e-12 77.0 146 51.4
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.2e-12 77.0 43 79.1
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.2e-12 77.0 34 94.1
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 2.9e-12 76.6 40 82.5
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.9e-12 76.6 39 82.1
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 3.8e-12 76.3 37 86.5
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.8e-12 76.3 35 91.4
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.8e-12 76.3 35 91.4
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.8e-12 76.3 33 97.0
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 3.8e-12 76.3 37 86.5
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 4.9e-12 75.9 37 83.8
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 6.4e-12 75.5 37 83.8
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 6.4e-12 75.5 37 83.8
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 6.4e-12 75.5 37 83.8
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 6.4e-12 75.5 149 33.6
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 8.4e-12 75.1 36 83.3
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 8.4e-12 75.1 37 83.8
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 8.4e-12 75.1 37 83.8
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 8.4e-12 75.1 37 83.8
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 8.4e-12 75.1 37 83.8
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 8.4e-12 75.1 37 83.8
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.1e-11 74.7 35 88.6
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.1e-11 74.7 33 93.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.1e-11 74.7 36 86.1
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 1.4e-11 74.3 33 93.9
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 1.9e-11 73.9 38 78.9
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.9e-11 73.9 37 81.1
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.9e-11 73.9 37 81.1
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.9e-11 73.9 37 86.5
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 2.4e-11 73.6 41 75.6
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 2.4e-11 73.6 41 73.2
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 3.2e-11 73.2 146 49.3
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 3.2e-11 73.2 37 81.1
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.2e-11 73.2 37 86.5
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 3.2e-11 73.2 145 47.6
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 3.2e-11 73.2 145 47.6
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 4.2e-11 72.8 37 81.1
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 4.2e-11 72.8 35 85.7
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.2e-11 72.8 33 93.9
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 4.2e-11 72.8 36 83.3
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 4.2e-11 72.8 36 83.3
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 5.5e-11 72.4 40 82.5
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 5.5e-11 72.4 36 80.6
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 9.3e-11 71.6 37 78.4
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 9.3e-11 71.6 37 83.8
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 9.3e-11 71.6 37 83.8
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.2e-10 71.2 146 47.3
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.2e-10 71.2 31 93.5
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.1e-10 70.5 41 68.3
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 2.7e-10 70.1 30 96.7
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.7e-10 70.1 31 93.5
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 3.5e-10 69.7 145 53.8
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 6.0e-10 68.9 33 81.8
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.0e-09 68.2 33 81.8
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.3e-09 67.8 32 84.4
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 3.0e-09 66.6 32 81.2
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 3.9e-09 66.2 33 78.8
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 8.7e-09 65.1 41 73.2
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.1e-08 64.7 31 87.1
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 1.9e-08 63.9 33 75.8
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.5e-08 63.5 27 92.6
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 3.3e-08 63.2 33 72.7
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 4.3e-08 62.8 26 96.2
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.6e-08 62.4 27 92.6
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.7e-07 59.7 33 75.8
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.4e-06 57.0 28 82.1
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 4.0e-06 56.2 23 95.7


User provided reference genes

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