Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 5.4e-122 441.0 227 100.0
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 1.0e-96 357.1 229 79.0
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.2e-92 343.6 230 73.9
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.3e-91 340.1 231 73.6
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 4.9e-91 338.2 229 75.1
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 6.4e-91 337.8 231 74.0
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.4e-90 336.7 231 73.2
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.6e-89 333.2 232 73.7
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.0e-88 330.5 233 72.5
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.3e-88 329.3 229 72.1
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 3.0e-88 328.9 232 73.7
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 5.1e-88 328.2 233 71.7
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 5.1e-88 328.2 239 71.1
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 5.1e-88 328.2 233 70.4
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.5e-87 326.6 233 70.0
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 3.3e-87 325.5 229 72.5
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 4.3e-87 325.1 234 70.5
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 5.6e-87 324.7 231 73.6
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 9.6e-87 323.9 231 71.9
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 9.6e-87 323.9 227 70.9
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.6e-86 323.2 229 70.3
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 2.1e-86 322.8 230 70.9
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 3.6e-86 322.0 228 71.5
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 6.2e-86 321.2 229 70.3
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.1e-85 320.5 230 71.7
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 2.4e-85 319.3 230 70.0
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.4e-85 319.3 222 71.6
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.2e-84 317.0 227 69.6
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.5e-84 316.6 230 69.6
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.6e-84 315.8 230 71.3
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 5.8e-84 314.7 226 68.1
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 7.6e-84 314.3 229 71.6
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 9.9e-84 313.9 226 69.9
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 3.8e-83 312.0 208 74.0
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 8.4e-83 310.8 226 67.3
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 1.1e-82 310.5 233 70.0
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.4e-82 309.3 226 67.3
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 3.2e-82 308.9 231 67.5
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 4.2e-82 308.5 228 69.7
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 5.4e-82 308.1 228 73.7
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.0e-80 303.9 229 69.9
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.9e-80 302.0 229 67.2
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 3.9e-80 302.0 223 69.5
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 1.5e-79 300.1 231 68.8
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.5e-79 299.3 233 66.5
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 1.6e-78 296.6 234 69.7
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.1e-78 296.2 231 67.5
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 4.8e-78 295.0 226 63.7
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.1e-77 293.9 230 66.1
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.4e-77 293.5 228 67.1
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.8e-77 293.1 243 61.7
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 1.8e-77 293.1 234 68.4
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.8e-77 293.1 222 68.9
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 5.3e-77 291.6 226 64.2
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.5e-76 290.0 234 68.4
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 2.6e-76 289.3 227 65.2
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 2.6e-76 289.3 227 66.5
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 5.8e-76 288.1 230 68.3
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 7.6e-76 287.7 233 69.1
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.0e-75 287.3 229 64.2
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.7e-75 286.6 223 65.9
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 2.9e-75 285.8 227 64.8
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.8e-75 285.4 227 65.2
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.9e-75 285.0 227 64.8
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 6.5e-75 284.6 228 65.8
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 8.4e-75 284.3 227 65.2
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 8.4e-75 284.3 227 63.4
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.4e-75 284.3 232 62.9
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.4e-75 284.3 232 62.9
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 5.5e-74 281.6 233 67.0
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 5.5e-74 281.6 210 66.7
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 7.1e-74 281.2 232 67.7
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 7.1e-74 281.2 234 63.2
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 9.3e-74 280.8 228 64.5
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 1.2e-73 280.4 226 62.8
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 2.1e-73 279.6 232 65.5
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 2.7e-73 279.3 233 65.7
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 3.5e-73 278.9 228 64.9
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.8e-72 276.6 231 62.3
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 2.3e-72 276.2 235 63.4
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 6.7e-72 274.6 236 59.7
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 3.3e-71 272.3 231 60.6
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 3.3e-71 272.3 233 62.2
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 5.7e-71 271.6 235 65.5
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 7.4e-71 271.2 230 65.7
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.6e-70 270.0 231 60.2
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 2.1e-70 269.6 229 59.8
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.1e-69 267.3 237 58.2
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 9.0e-69 264.2 243 59.3
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.2e-68 263.8 284 52.5
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.5e-68 263.5 227 65.6
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.9e-67 259.2 210 64.3
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 3.8e-67 258.8 237 63.3
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 6.5e-67 258.1 249 60.6
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 2.5e-66 256.1 221 58.4
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 3.0e-64 249.2 275 49.5
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 3.9e-64 248.8 212 66.0
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 1.5e-63 246.9 153 83.7
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 2.5e-63 246.1 230 55.7
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 5.7e-63 245.0 209 59.8
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 2.0e-60 236.5 213 63.8
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 5.0e-59 231.9 177 67.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.4e-58 230.3 230 53.0
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.1e-53 214.2 239 50.2
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.1e-53 212.2 229 51.1
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.0e-51 207.6 168 66.1
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 6.5e-51 204.9 225 52.4
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 7.2e-50 201.4 266 44.7
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 3.0e-48 196.1 234 48.3
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 1.1e-47 194.1 179 57.0
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 8.2e-46 188.0 231 47.6
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 9.4e-42 174.5 139 64.7
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 2.1e-41 173.3 140 61.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.7e-41 172.9 230 43.5
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 2.7e-41 172.9 222 44.1
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.1e-39 167.5 93 83.9
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 3.7e-38 162.5 225 41.8
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 6.3e-38 161.8 246 40.2
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 8.2e-38 161.4 231 43.3
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 4.1e-37 159.1 131 59.5
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 2.1e-33 146.7 206 45.6
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 5.2e-32 142.1 110 66.4
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.4e-31 139.4 92 68.5
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 3.8e-27 125.9 142 52.1
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 6.5e-27 125.2 99 62.6
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 4.2e-26 122.5 137 53.3
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.6e-25 119.4 99 60.6
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 3.4e-23 112.8 146 48.6
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 1.6e-20 104.0 154 42.2
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 9.5e-18 94.7 76 63.2
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.1e-17 93.6 135 42.2
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 2.1e-17 93.6 216 31.5
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 3.6e-17 92.8 110 44.5
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 1.2e-15 87.8 112 48.2
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.6e-15 86.7 73 61.6
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 8.3e-14 81.6 183 30.6
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 4.1e-13 79.3 53 69.8
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.7e-12 76.6 94 48.9
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 3.5e-12 76.3 82 53.7
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 4.3e-10 69.3 103 38.8


User provided reference genes

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