Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 1.1e-41 172.9 94 100.0
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 7.4e-25 117.1 95 69.5
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 1.8e-23 112.5 94 69.1
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 6.9e-23 110.5 77 76.6
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 6.5e-21 104.0 93 64.5
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.5e-20 102.1 94 66.0
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 4.6e-19 97.8 104 59.6
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 3.0e-18 95.1 80 63.8
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 1.5e-17 92.8 78 62.8
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 1.9e-17 92.4 73 65.8
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.9e-17 92.4 87 64.4
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.6e-16 89.4 81 60.5
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.6e-16 89.4 81 60.5
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 2.2e-16 89.0 81 60.5
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 2.8e-16 88.6 71 67.6
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 1.1e-15 86.7 100 56.0
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 2.4e-15 85.5 93 51.6
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 3.1e-15 85.1 83 55.4
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 5.3e-15 84.3 72 66.7
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 9.0e-15 83.6 72 63.9
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 1.2e-14 83.2 82 62.2
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 1.5e-14 82.8 90 56.7
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 1.5e-14 82.8 68 67.6
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.5e-14 82.8 94 54.3
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 2.6e-14 82.0 93 58.1
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 2.6e-14 82.0 90 52.2
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 4.5e-14 81.3 99 54.5
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 5.9e-14 80.9 99 54.5
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 5.9e-14 80.9 65 66.2
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.0e-13 80.1 100 49.0
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 1.3e-13 79.7 81 59.3
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.7e-13 79.3 71 57.7
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 2.2e-13 79.0 78 57.7
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 2.2e-13 79.0 77 57.1
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 3.8e-13 78.2 80 56.2
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 6.5e-13 77.4 81 55.6
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 6.5e-13 77.4 107 45.8
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 6.5e-13 77.4 107 45.8
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 8.5e-13 77.0 67 64.2
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.1e-12 76.6 94 54.3
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 1.4e-12 76.3 65 64.6
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 1.9e-12 75.9 92 53.3
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 2.5e-12 75.5 91 49.5
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 2.5e-12 75.5 78 56.4
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 3.2e-12 75.1 93 50.5
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 4.2e-12 74.7 93 50.5
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 4.2e-12 74.7 67 61.2
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 7.2e-12 73.9 81 53.1
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 7.2e-12 73.9 81 53.1
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 7.2e-12 73.9 100 45.0
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 9.4e-12 73.6 91 49.5
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 9.4e-12 73.6 91 51.6
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 1.2e-11 73.2 78 55.1
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 1.2e-11 73.2 81 53.1
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.2e-11 73.2 91 51.6
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 1.6e-11 72.8 81 51.9
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 2.7e-11 72.0 67 61.2
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 2.7e-11 72.0 78 57.7
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 3.6e-11 71.6 81 51.9
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 4.6e-11 71.2 73 53.4
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 6.1e-11 70.9 66 62.1
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 6.1e-11 70.9 66 62.1
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 7.9e-11 70.5 78 53.8
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 7.9e-11 70.5 74 52.7
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 1.0e-10 70.1 94 47.9
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 1.4e-10 69.7 67 56.7
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 1.4e-10 69.7 81 50.6
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 1.8e-10 69.3 93 47.3
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.9e-10 68.2 75 53.3
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 3.9e-10 68.2 69 56.5
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 5.1e-10 67.8 93 46.2
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 6.7e-10 67.4 89 47.2
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 2.5e-09 65.5 71 52.1
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 9.7e-09 63.5 82 46.3
Os06g0651200 Oryza sativa ssp. japonica HOM05D007802 ORTHO05D009879 9.7e-09 63.5 71 49.3
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 9.7e-09 63.5 68 52.9
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 9.7e-09 63.5 80 47.5
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 1.3e-08 63.2 75 50.7
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 2.8e-08 62.0 87 44.8
Zm00001eb388760 Zea mays HOM05D007802 ORTHO05D009879 1.8e-07 59.3 54 63.0
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 1.2e-06 56.6 45 62.2
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.2e-06 56.6 69 47.8
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 2.0e-06 55.8 69 47.8


User provided reference genes

Program Settings