Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 2.4e-102 375.6 195 100.0
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 4.0e-81 305.1 197 83.2
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 1.5e-80 303.1 197 82.7
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 2.0e-80 302.8 197 83.8
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.6e-77 293.1 198 79.8
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 1.5e-75 286.6 181 82.9
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 2.8e-74 282.3 196 77.6
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 1.4e-73 280.0 182 80.2
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 4.4e-72 275.0 199 75.4
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 1.7e-71 273.1 199 74.9
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 3.7e-71 271.9 195 77.9
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 4.9e-71 271.6 197 74.6
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 1.1e-70 270.4 181 79.0
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 1.4e-70 270.0 195 76.4
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 1.8e-70 269.6 161 86.3
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 4.1e-70 268.5 182 79.7
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 7.8e-69 264.2 193 75.1
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 2.9e-68 262.3 197 75.6
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 2.9e-68 262.3 191 74.9
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 1.1e-67 260.4 195 74.4
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 1.5e-67 260.0 195 73.3
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 1.9e-67 259.6 181 77.3
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 2.5e-67 259.2 186 74.7
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 5.6e-67 258.1 198 71.2
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 1.2e-66 256.9 182 75.8
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 4.7e-66 255.0 219 67.6
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 1.4e-65 253.4 177 75.1
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 2.3e-65 252.7 197 69.0
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 4.0e-65 251.9 198 69.7
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 6.8e-65 251.1 197 70.1
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 8.9e-65 250.8 187 74.9
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 8.9e-65 250.8 178 74.7
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 1.5e-64 250.0 180 77.8
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 1.5e-64 250.0 197 73.6
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 4.4e-64 248.4 187 71.1
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 5.7e-64 248.1 187 72.7
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 7.5e-64 247.7 182 72.0
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 9.8e-64 247.3 178 73.6
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 9.8e-64 247.3 178 73.6
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 1.7e-63 246.5 198 72.2
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 2.9e-63 245.7 187 73.8
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 3.7e-63 245.4 202 68.8
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.9e-63 245.0 193 72.0
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 6.4e-63 244.6 195 68.7
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 6.4e-63 244.6 191 69.1
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 1.4e-62 243.4 197 71.6
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 4.1e-62 241.9 202 68.3
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 5.4e-62 241.5 169 74.0
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 5.4e-62 241.5 199 70.9
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 9.2e-62 240.7 202 67.8
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 1.2e-61 240.4 186 72.0
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 1.2e-61 240.4 198 70.7
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 1.6e-61 240.0 188 71.3
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 2.0e-61 239.6 176 75.0
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.7e-61 239.2 184 69.6
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 5.9e-61 238.0 190 70.5
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 7.8e-61 237.7 188 69.7
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 1.0e-60 237.3 188 70.2
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 1.0e-60 237.3 213 66.2
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.3e-60 236.9 184 69.0
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 1.7e-60 236.5 193 69.4
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 2.3e-60 236.1 196 67.3
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 6.6e-60 234.6 197 69.0
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 8.6e-60 234.2 187 70.1
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 8.6e-60 234.2 199 67.8
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 1.1e-59 233.8 177 71.2
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 1.9e-59 233.0 181 70.7
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 2.5e-59 232.6 188 69.1
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 4.3e-59 231.9 183 71.0
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 4.3e-59 231.9 183 68.9
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 9.5e-59 230.7 195 66.7
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 9.5e-59 230.7 193 67.9
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 1.6e-58 229.9 185 68.6
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 2.1e-58 229.6 187 69.5
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 6.2e-58 228.0 185 69.7
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 6.2e-58 228.0 195 65.6
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 4.0e-57 225.3 195 64.6
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 5.2e-57 224.9 184 69.6
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.5e-56 223.4 179 69.8
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 9.8e-56 220.7 163 71.8
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 9.8e-56 220.7 201 67.2
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 9.8e-56 220.7 130 85.4
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 1.7e-55 219.9 163 73.0
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 2.9e-55 219.2 181 69.6
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 2.9e-55 219.2 238 56.7
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 4.9e-55 218.4 186 66.7
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 1.9e-54 216.5 182 68.1
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 7.0e-54 214.5 182 68.1
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 2.7e-53 212.6 176 65.3
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 3.5e-53 212.2 188 64.4
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 3.5e-53 212.2 179 67.6
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 1.1e-51 207.2 177 67.2
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 2.5e-51 206.1 186 64.5
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 2.8e-50 202.6 182 62.6
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.8e-49 199.9 195 60.5
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 1.8e-49 199.9 190 61.1
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.2e-48 197.2 110 86.4
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 3.4e-48 195.7 110 84.5
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 3.4e-48 195.7 170 61.8
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 2.2e-47 193.0 152 71.7
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 2.2e-47 193.0 110 85.5
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 6.4e-47 191.4 113 84.1
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 1.1e-46 190.7 152 71.1
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 3.2e-46 189.1 171 61.4
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 5.4e-46 188.3 110 81.8
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.5e-45 185.7 145 66.9
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 4.6e-45 185.3 110 80.9
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 2.5e-43 179.5 116 77.6
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 8.9e-41 171.0 141 69.5
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 4.1e-38 162.2 103 84.5
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.6e-37 160.2 91 83.5
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.3e-36 157.1 91 82.4
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 5.6e-35 151.8 142 64.1
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 7.3e-35 151.4 88 84.1
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 3.6e-34 149.1 91 81.3
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 3.1e-33 146.0 109 64.2
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 1.6e-29 133.7 188 43.6
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.7e-28 130.2 89 69.7
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 2.3e-28 129.8 108 56.5
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 6.6e-28 128.3 69 85.5
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 1.3e-26 124.0 128 48.4
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 2.8e-26 122.9 69 81.2
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 3.1e-25 119.4 97 57.7
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 1.2e-24 117.5 94 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 1.9e-22 110.2 109 51.4
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 3.5e-21 105.9 106 50.0
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 4.8e-18 95.5 92 54.3
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.9e-07 58.9 85 32.9


User provided reference genes

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