Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 1.4e-136 489.6 243 100.0
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 2.3e-102 375.9 246 79.3
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 3.9e-94 348.6 242 71.5
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 1.8e-91 339.7 252 67.9
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 5.8e-90 334.7 244 73.4
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 9.9e-90 334.0 244 70.9
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 5.4e-88 328.2 244 68.0
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 3.5e-87 325.5 243 68.3
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 7.9e-87 324.3 256 65.2
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 2.5e-85 319.3 247 68.0
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 4.3e-85 318.5 244 68.0
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 3.7e-84 315.5 251 64.9
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 4.8e-84 315.1 245 66.1
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 1.8e-83 313.2 237 68.8
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.4e-83 312.8 237 66.2
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 4.0e-83 312.0 246 65.4
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 5.3e-83 311.6 246 67.1
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 6.9e-83 311.2 237 66.2
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 9.0e-83 310.8 241 68.9
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 1.2e-82 310.5 241 67.2
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 5.8e-82 308.1 245 64.9
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 5.8e-82 308.1 246 65.9
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 9.9e-82 307.4 244 65.6
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 1.3e-81 307.0 247 69.2
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 2.9e-81 305.8 245 64.9
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 2.9e-81 305.8 245 67.3
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 6.4e-81 304.7 246 64.6
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 1.9e-80 303.1 248 63.7
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 3.2e-80 302.4 246 65.0
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 7.1e-80 301.2 246 63.8
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 7.1e-80 301.2 248 64.9
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 9.3e-80 300.8 243 64.2
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 9.3e-80 300.8 244 63.1
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 9.3e-80 300.8 243 64.6
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 9.3e-80 300.8 245 65.3
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 1.6e-79 300.1 256 62.9
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 1.6e-79 300.1 247 63.2
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 2.7e-79 299.3 243 63.0
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 2.7e-79 299.3 246 64.2
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 3.5e-79 298.9 243 63.4
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 6.0e-79 298.1 243 63.8
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 7.9e-79 297.7 244 62.7
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 1.8e-78 296.6 238 65.5
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 6.7e-78 294.7 226 68.6
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 6.7e-78 294.7 237 62.9
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 1.1e-77 293.9 244 64.8
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 1.1e-77 293.9 245 65.7
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.3e-77 292.4 237 62.0
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 5.6e-77 291.6 247 64.0
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 7.4e-77 291.2 245 63.3
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 9.6e-77 290.8 238 65.1
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 9.6e-77 290.8 222 64.9
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 1.6e-76 290.0 247 61.5
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 2.1e-76 289.7 248 62.1
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 6.2e-76 288.1 237 62.0
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 3.4e-74 282.3 217 65.9
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 1.0e-73 280.8 237 61.2
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 1.7e-73 280.0 214 67.3
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 2.9e-73 279.3 241 58.5
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 3.2e-72 275.8 222 62.2
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 9.3e-72 274.2 235 60.0
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 1.6e-71 273.5 237 60.8
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 3.5e-71 272.3 249 56.6
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 4.6e-71 271.9 236 59.3
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 4.6e-71 271.9 249 57.8
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 1.0e-70 270.8 222 61.7
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 2.3e-70 269.6 254 55.1
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.1e-69 267.3 246 59.8
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 3.3e-69 265.8 222 60.4
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 3.3e-69 265.8 249 56.6
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 3.7e-68 262.3 205 62.9
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.8e-67 260.0 238 59.2
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 2.9e-65 252.7 221 60.2
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 1.9e-64 250.0 254 52.8
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 2.5e-64 249.6 229 56.8
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 2.5e-64 249.6 227 59.0
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 7.2e-64 248.1 198 63.6
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 4.6e-63 245.4 224 58.9
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 6.1e-63 245.0 195 65.6
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 6.1e-63 245.0 247 57.5
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 1.0e-62 244.2 224 58.9
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 1.0e-62 244.2 227 60.4
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 1.4e-62 243.8 234 57.3
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 1.4e-62 243.8 225 53.8
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 2.3e-62 243.0 242 55.0
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 3.0e-62 242.7 224 58.5
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 3.0e-62 242.7 224 58.5
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 8.8e-62 241.1 194 64.9
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 8.8e-62 241.1 206 58.3
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 7.4e-61 238.0 249 53.0
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 1.3e-60 237.3 169 69.8
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 1.1e-56 224.2 179 63.7
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 1.6e-55 220.3 145 72.4
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 3.7e-52 209.1 196 52.0
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 8.2e-52 208.0 213 50.7
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 9.1e-51 204.5 180 57.8
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 1.5e-50 203.8 143 69.2
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 1.0e-49 201.1 246 49.2
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 4.7e-47 192.2 188 49.5
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 8.8e-46 188.0 176 51.7
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 8.2e-44 181.4 182 50.0
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 3.1e-43 179.5 172 54.7
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 3.1e-43 179.5 214 48.1
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 2.9e-41 172.9 190 45.3
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 1.2e-39 167.5 214 45.3
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 3.5e-34 149.4 211 39.8
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 3.2e-32 142.9 172 49.4
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 6.1e-31 138.7 88 73.9
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 1.8e-30 137.1 144 54.2
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 2.2e-28 130.2 157 48.4
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 1.2e-26 124.4 197 36.5
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 1.5e-24 117.5 83 68.7
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 7.0e-19 98.6 112 45.5
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 1.2e-18 97.8 67 70.1
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 5.9e-18 95.5 110 41.8
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 8.6e-17 91.7 204 33.3
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 4.1e-11 72.8 76 50.0
Oeu004139.1 Olea europaea HOM05D007174 ORTHO05D009061 1.7e-09 67.4 105 42.9
arahy.Tifrunner.gnm1.ann1.3M52EB Arachis hypogaea HOM05D007174 ORTHO05D010441 1.9e-08 63.9 39 76.9


User provided reference genes

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