Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 4.8e-191 671.0 339 100.0
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.4e-110 403.7 280 77.1
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 5.1e-108 395.2 280 75.0
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 3.6e-106 389.0 276 76.4
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 2.1e-101 373.2 276 73.2
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 6.0e-101 371.7 280 71.4
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 3.6e-98 362.5 279 68.1
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 7.6e-96 354.8 277 66.8
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 9.9e-96 354.4 279 67.4
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.7e-95 353.6 303 63.0
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.7e-95 353.6 278 68.0
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 2.7e-93 346.3 280 68.2
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 5.1e-92 342.0 277 65.7
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.1e-91 340.9 279 63.8
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.6e-90 337.0 277 65.3
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.6e-90 337.0 277 65.3
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 4.8e-90 335.5 278 63.3
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 8.1e-90 334.7 279 63.4
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 3.1e-89 332.8 279 63.4
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.5e-88 330.5 309 57.9
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 4.5e-88 328.9 279 62.4
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 2.5e-83 313.2 280 60.0
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 1.3e-82 310.8 280 58.2
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.8e-82 309.7 277 59.9
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 3.7e-82 309.3 276 59.8
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 6.2e-82 308.5 277 59.2
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.1e-81 307.8 280 58.6
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.4e-81 307.4 274 61.3
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 2.6e-80 303.1 274 60.2
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 2.2e-79 300.1 277 57.4
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 4.9e-79 298.9 279 57.3
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 4.9e-79 298.9 294 55.1
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 4.9e-79 298.9 265 59.6
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.9e-78 297.0 281 56.6
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 2.5e-78 296.6 320 52.5
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.5e-78 296.6 279 57.0
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 3.2e-78 296.2 275 60.0
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 9.3e-78 294.7 279 56.6
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.6e-77 293.9 278 58.6
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 3.5e-77 292.7 277 57.4
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 4.6e-77 292.4 276 54.3
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 7.9e-77 291.6 278 57.9
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 7.9e-77 291.6 278 56.1
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.0e-76 291.2 276 54.7
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 2.3e-76 290.0 280 56.1
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.1e-75 287.7 306 55.2
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 4.3e-75 285.8 286 55.2
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 4.3e-75 285.8 277 56.7
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.6e-74 283.9 276 55.8
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 2.8e-74 283.1 277 57.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 6.2e-74 282.0 276 54.3
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.8e-73 280.4 274 57.7
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 4.0e-73 279.3 278 54.3
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 5.3e-73 278.9 283 54.8
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 5.3e-73 278.9 278 54.0
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 3.4e-72 276.2 277 54.5
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 7.6e-72 275.0 284 54.6
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 7.6e-72 275.0 319 49.2
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 2.2e-71 273.5 277 53.1
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 3.8e-71 272.7 276 54.7
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 4.9e-71 272.3 286 53.5
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 6.5e-71 271.9 282 54.6
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 3.2e-70 269.6 276 54.3
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.2e-70 269.2 285 54.7
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 4.2e-70 269.2 294 53.7
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 7.1e-70 268.5 285 54.4
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 2.7e-69 266.5 282 52.8
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.7e-69 266.5 285 54.0
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.5e-69 266.2 285 54.0
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.8e-68 263.8 299 52.8
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 5.1e-68 262.3 275 51.6
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 5.1e-68 262.3 275 51.6
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.1e-67 261.2 292 53.1
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.5e-67 260.8 292 52.7
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.5e-67 260.8 284 51.1
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.5e-67 260.0 287 52.6
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 1.3e-66 257.7 290 52.4
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 1.6e-66 257.3 272 52.2
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 6.3e-66 255.4 229 60.3
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 1.1e-65 254.6 279 50.5
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 1.4e-65 254.2 278 51.1
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 5.3e-65 252.3 277 52.0
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.0e-64 250.4 278 50.4
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 7.7e-64 248.4 279 50.9
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 7.7e-64 248.4 279 52.0
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.3e-63 247.7 282 47.9
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 2.2e-63 246.9 280 47.9
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.9e-63 246.5 275 50.2
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.8e-63 246.1 280 47.5
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.9e-62 243.8 280 49.6
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.9e-62 243.8 280 48.9
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.5e-62 243.4 285 49.1
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 9.4e-62 241.5 280 46.8
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 4.6e-61 239.2 280 47.9
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 4.6e-61 239.2 280 47.9
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 7.9e-61 238.4 285 48.4
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 1.0e-60 238.0 280 47.9
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.0e-60 238.0 280 47.5
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.0e-60 238.0 275 46.5
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 1.8e-60 237.3 231 55.8
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 3.0e-60 236.5 282 48.9
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 9.7e-59 231.5 280 48.2
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.3e-58 231.1 280 47.5
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.7e-58 230.7 249 49.0
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 2.8e-58 229.9 280 47.1
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 6.3e-58 228.8 277 48.7
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 4.1e-57 226.1 300 45.3
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 2.9e-55 219.9 276 47.5
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 5.0e-55 219.2 283 44.2
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 8.5e-55 218.4 175 64.6
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 3.2e-54 216.5 279 46.2
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 7.2e-54 215.3 199 63.3
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 7.9e-53 211.8 243 49.4
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 1.5e-51 207.6 282 44.0
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 9.7e-51 204.9 276 45.7
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.4e-49 200.3 276 42.0
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 9.1e-49 198.4 283 41.7
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 4.2e-46 189.5 303 40.3
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 4.2e-46 189.5 205 51.2
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 3.0e-44 183.3 266 45.1
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.5e-43 181.0 271 40.2
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.3e-42 177.9 292 37.3
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 4.1e-41 172.9 285 37.5
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.9e-39 166.8 271 35.8
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.0e-36 156.8 254 43.3
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 8.8e-36 155.2 272 37.5
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.5e-32 142.9 275 36.0
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 5.0e-31 139.4 213 39.4
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.1e-30 138.3 236 37.3
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.5e-30 137.9 279 35.1
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 4.8e-26 122.9 108 53.7
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 6.3e-26 122.5 108 52.8
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 5.9e-24 115.9 103 52.4
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.7e-23 114.4 195 34.9
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 1.8e-20 104.4 155 40.6
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 3.0e-20 103.6 251 29.5
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.0e-15 88.6 280 27.5
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.9e-15 86.7 217 30.4


User provided reference genes

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