Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 8.8e-251 869.8 426 100.0
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.0e-206 723.4 425 82.6
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 5.8e-186 654.4 425 75.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 3.0e-182 642.1 384 81.5
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 2.9e-169 599.0 427 67.9
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 1.6e-167 593.2 426 70.2
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 1.1e-163 580.5 420 66.7
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 6.5e-161 571.2 427 67.4
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 1.4e-160 570.1 425 66.4
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.2e-159 567.0 418 66.5
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.6e-159 565.5 418 66.7
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 6.1e-159 564.7 426 66.0
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 6.1e-159 564.7 418 66.5
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.0e-158 563.9 418 66.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 3.9e-158 562.0 424 65.6
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 7.4e-157 557.8 425 62.8
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.7e-156 556.6 427 65.3
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.4e-155 552.7 426 64.3
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.5e-154 550.1 426 63.8
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 7.2e-152 541.2 426 63.1
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.6e-151 538.9 426 62.9
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 2.3e-150 536.2 411 65.5
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 7.4e-149 531.2 425 61.6
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.3e-148 530.4 426 62.7
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 3.7e-148 528.9 425 62.8
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 4.8e-148 528.5 419 63.7
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.9e-145 519.2 418 60.3
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.5e-145 517.7 420 60.2
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 3.2e-144 515.8 424 59.4
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.4e-142 510.4 420 59.8
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 4.4e-141 505.4 425 60.0
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 7.4e-141 504.6 422 59.7
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 7.4e-141 504.6 419 59.4
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 2.2e-140 503.1 253 97.2
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.6e-138 496.9 400 62.0
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 4.5e-138 495.4 416 57.9
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 3.8e-137 492.3 256 96.1
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.5e-136 490.3 424 56.1
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.9e-136 490.0 406 60.8
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 5.5e-136 488.4 410 58.0
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 9.4e-136 487.6 427 59.3
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 1.2e-135 487.3 424 58.7
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 3.6e-135 485.7 424 60.1
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.4e-134 483.8 416 57.2
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.8e-134 483.4 399 59.9
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-134 483.4 424 58.3
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 2.3e-134 483.0 416 59.4
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 3.0e-134 482.6 418 57.7
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 6.7e-134 481.5 417 57.6
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.5e-133 480.3 418 57.2
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 1.3e-132 477.2 425 58.1
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.1e-131 474.2 428 54.9
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.1e-131 474.2 418 57.9
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.4e-131 473.8 394 60.2
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 3.1e-131 472.6 398 58.8
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 9.1e-131 471.1 418 56.9
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.7e-130 469.5 419 56.6
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-129 466.8 411 58.9
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 2.5e-128 463.0 418 57.4
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 2.5e-128 463.0 414 56.5
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 3.2e-128 462.6 430 57.0
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.4e-126 457.2 426 54.2
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.4e-126 457.2 419 54.4
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.3e-126 456.4 401 57.6
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.0e-125 453.4 385 56.6
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 2.6e-125 453.0 431 55.5
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 4.8e-124 448.7 372 60.8
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.3e-121 440.7 412 56.6
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 2.1e-119 433.3 399 57.1
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 4.7e-119 432.2 427 52.5
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 2.3e-118 429.9 392 53.1
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 2.3e-118 429.9 409 52.1
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.4e-117 426.0 402 56.0
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 7.5e-117 424.9 403 56.1
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 1.7e-116 423.7 426 51.6
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.4e-115 420.6 402 55.5
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 2.4e-115 419.9 432 51.9
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.4e-115 419.9 404 54.5
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 3.1e-115 419.5 401 53.6
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 1.6e-114 417.2 401 53.4
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.5e-114 416.0 399 55.4
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 4.5e-114 415.6 425 51.3
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.0e-113 414.5 432 50.7
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 3.8e-113 412.5 405 51.4
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 1.5e-112 410.6 400 53.0
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 2.5e-112 409.8 400 53.0
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 7.3e-112 408.3 404 53.2
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 3.1e-110 402.9 405 49.6
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 3.1e-110 402.9 435 49.0
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.0e-110 402.5 393 54.5
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 3.7e-108 396.0 390 51.0
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 1.1e-107 394.4 390 51.3
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 2.4e-107 393.3 390 51.5
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 3.2e-107 392.9 381 52.2
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.0e-106 390.2 390 51.0
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 2.7e-106 389.8 426 50.9
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 1.3e-105 387.5 417 50.1
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 4.3e-104 382.5 395 52.2
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 3.5e-98 362.8 385 50.4
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 2.5e-96 356.7 396 48.5
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.2e-95 354.4 399 49.1
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-94 350.9 328 56.7
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 6.8e-94 348.6 253 72.3
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 1.4e-91 340.9 298 57.0
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 8.9e-86 321.6 411 46.0
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.8e-82 308.5 297 57.2
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.3e-81 307.8 254 63.0
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 5.1e-81 305.8 286 54.2
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.9e-80 303.9 276 57.2
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 6.2e-79 298.9 298 52.0
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 1.2e-74 284.6 208 67.3
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 5.6e-72 275.8 173 76.3
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 9.0e-70 268.5 193 62.7
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 3.8e-68 263.1 228 56.1
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 3.5e-66 256.5 316 44.6
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.9e-64 250.8 421 37.1
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.1e-62 245.0 193 63.7
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 6.0e-58 229.2 416 35.6
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.6e-56 221.9 169 64.5
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.2e-53 214.9 233 54.1
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 2.1e-50 204.1 177 56.5
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.7e-45 185.7 137 68.6
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-43 181.0 325 35.7
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 1.0e-41 175.3 223 46.6
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.1e-40 171.8 161 52.8
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-40 171.4 281 37.7
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 3.7e-39 166.8 164 51.8
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 9.1e-38 162.2 177 51.4
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 7.9e-34 149.1 106 63.2
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.9e-33 146.7 111 69.4
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.7e-31 141.4 177 45.2
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-31 141.4 115 65.2
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-28 131.0 215 41.9
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-24 117.5 118 50.0
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.2e-23 112.5 118 47.5
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 4.1e-22 110.2 101 51.5
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.8e-16 89.0 89 51.7
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 1.3e-12 78.6 102 42.2
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.4e-11 72.4 73 53.4
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 4.0e-09 67.0 90 38.9
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 5.7e-08 63.2 64 46.9
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 1.1e-06 58.9 52 48.1
Sabra16G0078000 Salix brachista HOM05D001558 ORTHO05D003061 2.4e-06 57.8 121 32.2


User provided reference genes

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