Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.0e-88 330.1 169 100.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.3e-35 153.7 170 55.9
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.4e-34 150.2 164 54.9
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.9e-31 139.8 171 52.0
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.4e-29 133.7 162 51.2
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.1e-29 132.5 169 52.1
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 6.8e-29 131.3 163 50.3
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 9.8e-28 127.5 172 48.3
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.9e-27 125.2 169 47.3
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.9e-27 125.2 169 47.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 4.9e-27 125.2 169 50.9
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 8.3e-27 124.4 169 47.3
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 8.3e-27 124.4 168 44.6
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 8.3e-27 124.4 169 47.9
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.1e-26 124.0 166 48.8
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.4e-26 123.6 163 47.9
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.9e-26 123.2 170 49.4
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 3.2e-26 122.5 149 49.7
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.0e-26 121.3 169 46.2
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.2e-26 120.9 169 46.2
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 9.2e-26 120.9 174 44.3
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.2e-25 120.6 169 46.2
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.2e-25 120.6 169 47.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.6e-25 120.2 171 47.4
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.6e-25 120.2 171 47.4
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.0e-25 119.8 171 46.8
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.7e-25 119.4 126 53.2
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 6.0e-25 118.2 126 51.6
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 6.0e-25 118.2 170 46.5
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 7.8e-25 117.9 169 47.9
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.0e-24 117.5 169 47.3
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.0e-24 117.5 170 50.0
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.3e-24 117.1 124 51.6
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.7e-24 116.7 159 47.2
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.0e-24 115.9 127 52.0
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.9e-24 115.5 124 50.8
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 5.0e-24 115.2 163 42.9
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 5.0e-24 115.2 171 46.8
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 6.6e-24 114.8 161 49.1
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 6.6e-24 114.8 126 51.6
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 8.6e-24 114.4 116 54.3
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 8.6e-24 114.4 89 67.4
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.5e-23 113.6 165 48.5
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.9e-23 113.2 145 47.6
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.9e-23 113.2 148 50.7
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.9e-23 113.2 126 50.8
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.9e-23 113.2 156 44.9
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 2.5e-23 112.8 122 50.8
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.3e-23 112.5 161 48.4
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 4.3e-23 112.1 141 49.6
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 5.6e-23 111.7 145 48.3
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 5.6e-23 111.7 171 46.8
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 5.6e-23 111.7 171 46.2
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 9.5e-23 110.9 170 47.1
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 9.5e-23 110.9 124 50.8
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.6e-22 110.2 170 44.7
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.8e-22 109.4 169 42.6
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 2.8e-22 109.4 164 46.3
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 3.6e-22 109.0 141 48.9
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 3.6e-22 109.0 169 44.4
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.6e-22 109.0 150 46.0
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.6e-22 109.0 155 44.5
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 6.2e-22 108.2 125 52.8
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 6.2e-22 108.2 154 45.5
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.1e-21 107.5 145 48.3
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.1e-21 107.5 168 44.6
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.8e-21 106.7 161 43.5
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.3e-21 106.3 163 43.6
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.3e-21 106.3 167 44.9
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 4.0e-21 105.5 86 64.0
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 8.9e-21 104.4 169 43.8
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 8.9e-21 104.4 169 45.0
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 8.9e-21 104.4 150 45.3
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-20 104.0 164 45.1
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.2e-20 104.0 159 43.4
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.2e-20 104.0 163 42.9
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 1.5e-20 103.6 94 60.6
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.6e-20 102.8 170 42.4
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 2.6e-20 102.8 111 50.5
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 4.4e-20 102.1 167 44.3
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 4.4e-20 102.1 165 43.0
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 9.8e-20 100.9 163 42.3
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.3e-19 100.5 160 43.1
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.3e-19 100.5 86 65.1
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.9e-19 99.4 164 42.7
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.9e-19 99.4 167 43.7
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 3.7e-19 99.0 132 48.5
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 4.9e-19 98.6 88 58.0
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.9e-19 98.6 164 43.3
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.9e-19 98.6 165 40.6
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 4.9e-19 98.6 161 42.9
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.1e-18 97.4 170 40.6
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.4e-18 97.1 113 49.6
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.4e-18 97.1 171 42.1
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.9e-18 96.7 84 60.7
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 3.2e-18 95.9 89 55.1
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 4.1e-18 95.5 161 43.5
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 4.1e-18 95.5 88 58.0
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 4.1e-18 95.5 89 56.2
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 4.1e-18 95.5 169 40.8
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-17 94.0 122 48.4
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.2e-17 94.0 83 61.4
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.2e-17 94.0 83 61.4
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.6e-17 93.6 124 47.6
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.7e-17 92.8 125 46.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.7e-17 92.8 89 53.9
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 4.6e-17 92.0 203 36.9
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 7.8e-17 91.3 166 41.6
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 7.8e-17 91.3 166 41.6
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.7e-16 90.1 123 44.7
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.7e-16 90.1 88 55.7
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.7e-16 90.1 125 44.0
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 3.0e-16 89.4 173 39.9
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.9e-15 86.7 171 42.1
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.9e-15 86.7 88 53.4
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.9e-15 86.7 90 53.3
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 3.3e-15 85.9 119 44.5
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 7.3e-15 84.7 99 50.5
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.2e-14 84.0 174 35.6
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 4.7e-14 82.0 96 47.9
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 6.2e-14 81.6 120 41.7
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.4e-13 80.5 90 47.8
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.8e-13 80.1 74 62.2
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 2.3e-13 79.7 88 47.7
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 4.0e-13 79.0 169 38.5
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.9e-13 77.8 140 40.0
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 2.0e-12 76.6 71 59.2
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.0e-12 76.6 98 42.9
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.0e-12 76.6 98 42.9
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.1e-10 70.9 101 43.6
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.2e-10 69.3 121 37.2
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 4.6e-09 65.5 71 53.5
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 6.0e-09 65.1 77 49.4
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.3e-08 63.9 35 80.0
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 8.6e-08 61.2 69 52.2
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 3.6e-06 55.8 135 29.6
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.6e-06 55.8 33 81.8


User provided reference genes

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