Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 0.0e+00 1455.7 730 100.0
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 3.7e-148 529.6 883 43.1
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 2.3e-113 414.1 823 39.7
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 5.7e-56 223.4 500 34.2
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 1.5e-53 215.3 492 33.9
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 3.4e-53 214.2 508 34.1
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 3.2e-51 207.6 1119 25.8
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.2e-50 205.7 497 33.8
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 1.4e-49 202.2 790 30.9
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 3.9e-49 200.7 846 27.8
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 5.1e-49 200.3 450 34.4
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 5.1e-49 200.3 768 29.2
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 6.7e-49 199.9 480 34.4
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 3.3e-48 197.6 489 34.4
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 9.7e-48 196.1 396 39.6
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 2.8e-47 194.5 767 28.8
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 6.3e-47 193.4 522 33.1
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 2.4e-46 191.4 689 30.9
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 1.2e-45 189.1 527 32.3
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 2.0e-45 188.3 545 32.3
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 2.0e-45 188.3 501 32.9
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 2.0e-45 188.3 593 29.2
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 4.5e-45 187.2 746 30.4
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 5.9e-45 186.8 504 32.7
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 7.7e-45 186.4 489 31.7
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.0e-44 186.0 475 33.3
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 1.3e-44 185.7 510 32.9
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 8.5e-44 183.0 504 32.3
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 8.5e-44 183.0 504 32.1
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 8.5e-44 183.0 504 30.6
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 1.5e-43 182.2 540 29.8
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 1.5e-43 182.2 505 31.5
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 1.9e-43 181.8 418 34.2
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.5e-43 181.4 506 30.6
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 4.2e-43 180.6 455 31.9
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 5.5e-43 180.3 508 30.5
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 5.5e-43 180.3 497 31.0
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 5.5e-43 180.3 552 30.1
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 5.5e-43 180.3 499 31.5
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 7.2e-43 179.9 506 30.4
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 7.2e-43 179.9 346 36.7
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 9.4e-43 179.5 517 31.7
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 9.4e-43 179.5 506 30.4
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 2.1e-42 178.3 479 31.9
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 3.6e-42 177.6 523 31.4
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 3.6e-42 177.6 540 30.6
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 1.4e-41 175.6 480 31.7
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.4e-41 175.6 506 29.8
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.4e-41 175.6 498 30.1
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.8e-41 175.3 492 31.5
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.8e-41 175.3 545 29.9
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 1.8e-41 175.3 512 31.8
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 6.7e-41 173.3 506 29.6
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 8.8e-41 172.9 524 30.7
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.5e-40 172.2 548 29.7
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.5e-40 172.2 936 24.6
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 2.6e-40 171.4 505 31.7
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 3.3e-40 171.0 519 30.3
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 3.3e-40 171.0 477 31.9
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 4.4e-40 170.6 418 32.1
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 5.7e-40 170.2 496 31.0
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 5.7e-40 170.2 739 27.9
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 1.7e-39 168.7 453 32.0
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 2.8e-39 167.9 478 31.2
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 3.7e-39 167.5 513 30.2
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 3.7e-39 167.5 680 29.0
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 4.8e-39 167.2 548 29.4
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 6.3e-39 166.8 513 29.4
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 1.8e-38 165.2 520 28.8
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 3.1e-38 164.5 501 30.5
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 5.9e-37 160.2 458 31.2
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 2.2e-36 158.3 516 29.8
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 2.9e-36 157.9 514 29.6
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 6.5e-36 156.8 464 30.8
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 8.5e-36 156.4 470 29.4
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 1.1e-35 156.0 489 30.1
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 2.5e-35 154.8 498 31.1
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 3.2e-35 154.5 460 32.0
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 4.2e-35 154.1 319 34.5
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 5.5e-35 153.7 497 28.6
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 7.2e-35 153.3 484 29.1
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 7.2e-35 153.3 505 29.7
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 7.2e-35 153.3 488 28.7
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 7.2e-35 153.3 316 35.1
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 7.2e-35 153.3 497 28.6
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 9.4e-35 152.9 521 27.6
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 1.6e-34 152.1 574 28.0
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 2.7e-34 151.4 485 29.7
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 3.6e-34 151.0 528 27.8
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 4.7e-34 150.6 308 35.4
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 6.1e-34 150.2 359 32.6
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 6.1e-34 150.2 457 31.3
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 8.0e-34 149.8 523 27.3
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 8.0e-34 149.8 486 28.6
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 1.0e-33 149.4 334 35.0
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 1.4e-33 149.1 478 29.7
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 1.8e-33 148.7 489 29.0
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 3.0e-33 147.9 467 30.2
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 4.0e-33 147.5 488 30.9
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 4.0e-33 147.5 494 29.4
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 4.0e-33 147.5 474 29.7
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 5.2e-33 147.1 325 34.5
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 5.2e-33 147.1 324 34.9
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 8.8e-33 146.4 485 28.9
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 2.0e-32 145.2 325 33.2
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 2.6e-32 144.8 535 30.8
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 2.2e-31 141.7 451 28.4
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 8.3e-31 139.8 194 46.9
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 1.2e-29 136.0 347 32.3
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 1.6e-29 135.6 529 27.8
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 2.0e-29 135.2 687 26.9
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.5e-29 134.4 338 31.4
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 1.3e-28 132.5 517 28.4
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 1.5e-27 129.0 347 30.3
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 1.5e-27 129.0 513 29.8
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 2.5e-27 128.3 325 31.1
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 2.5e-27 128.3 504 30.2
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.5e-27 128.3 523 27.5
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 2.5e-27 128.3 524 26.7
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 4.2e-27 127.5 358 32.7
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 7.2e-27 126.7 478 27.8
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 7.2e-27 126.7 547 28.9
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 1.2e-26 125.9 290 35.5
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 2.1e-26 125.2 486 28.6
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 2.7e-26 124.8 333 31.5
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 6.1e-26 123.6 505 26.9
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 4.0e-25 120.9 327 30.9
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 4.0e-25 120.9 374 29.4
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 6.8e-25 120.2 465 29.0
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 1.5e-24 119.0 521 26.1
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.5e-24 119.0 274 34.3
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 1.5e-24 119.0 487 28.3
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.0e-24 118.6 274 34.3
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 4.4e-24 117.5 459 29.2
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 4.4e-24 117.5 533 27.4
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 5.7e-24 117.1 404 31.4
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 7.5e-24 116.7 532 27.8
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 7.5e-24 116.7 451 26.2
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 9.8e-24 116.3 373 29.5
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.7e-23 115.5 306 31.0
Potri.004G073400 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.8e-23 114.8 271 32.8
MD01G1208800 Malus domestica HOM05D010729 ORTHO05D011897 3.7e-23 114.4 440 28.2
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 6.3e-23 113.6 309 33.0
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 8.3e-23 113.2 499 26.3
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 1.4e-22 112.5 492 27.0
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 1.4e-22 112.5 492 27.0
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 2.4e-22 111.7 532 27.4
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 5.4e-22 110.5 485 26.6
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.2e-21 109.4 488 26.6
Sabra04G0048100 Salix brachista HOM05D003611 ORTHO05D011897 1.2e-21 109.4 255 34.1
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 1.6e-21 109.0 327 30.3
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 7.7e-21 106.7 330 30.9
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 1.3e-20 105.9 514 28.0
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.3e-20 105.9 514 28.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.3e-20 105.9 514 28.0
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 1.7e-20 105.5 206 34.5
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.3e-20 105.1 316 29.1
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 6.6e-20 103.6 215 33.0
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 7.2e-19 100.1 212 34.4
RcHm_v2.0_Chr1g0378421 Rosa chinensis HOM05D010729 ORTHO05D011897 2.1e-18 98.6 749 23.6
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.5e-16 92.4 185 37.3
FAN01G1663 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.6e-10 72.4 249 29.3
AUR62021117 Chenopodium quinoa HOM05D034504 ORTHO05D026482 3.6e-10 71.2 208 28.8
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 3.6e-10 71.2 264 29.2
Glyma.10G230800 Glycine max HOM05D017332 ORTHO05D018498 8.0e-10 70.1 734 24.9
FAN06G3679 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.0e-09 69.7 186 30.1
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 2.3e-09 68.6 391 27.1
VMungo0720G0177 Vigna mungo HOM05D017332 ORTHO05D018498 5.2e-09 67.4 285 31.6
FvH4_7g30290 Fragaria vesca HOM05D010729 ORTHO05D011897 8.9e-09 66.6 186 29.6
AUR62031425 Chenopodium quinoa HOM05D034504 ORTHO05D026482 1.2e-08 66.2 222 26.6
FAN10G1814 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.0e-08 65.5 668 24.0
Glyma.20G162751 Glycine max HOM05D017332 ORTHO05D018498 3.7e-07 61.2 215 34.0
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 3.2e-06 58.2 271 29.2
Oeu054339.1 Olea europaea HOM05D003611 ORTHO05D004281 7.0e-06 57.0 59 44.1


User provided reference genes

Program Settings