Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 6.1e-305 1050.0 544 100.0
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 3.0e-243 845.1 552 80.1
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 3.9e-227 791.6 544 76.1
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 9.3e-221 770.4 546 76.0
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.8e-219 766.1 433 86.8
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 3.7e-217 758.4 555 73.0
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 7.1e-213 744.2 556 70.5
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 1.0e-211 740.3 557 70.2
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 5.1e-211 738.0 557 69.7
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 5.8e-207 724.5 538 69.3
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.4e-205 719.9 567 68.8
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 7.1e-205 717.6 440 80.2
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.6e-204 716.5 566 68.7
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.5e-204 715.3 555 68.8
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.0e-203 713.8 561 68.4
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 1.3e-203 713.4 560 68.8
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 6.7e-203 711.1 556 68.9
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.2e-201 706.1 561 67.9
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 4.8e-201 704.9 559 68.0
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 4.8e-201 704.9 550 67.1
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.4e-200 703.4 547 66.9
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 1.0e-198 697.2 518 70.3
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 2.7e-196 689.1 470 73.8
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.0e-195 685.6 515 69.1
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 8.8e-195 684.1 569 66.6
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 9.7e-194 680.6 559 65.7
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 1.3e-193 680.2 545 65.9
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 4.8e-193 678.3 539 66.8
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 1.2e-191 673.7 546 65.9
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.5e-191 671.8 540 67.0
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.0e-190 670.6 540 66.9
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 1.0e-190 670.6 542 65.7
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.3e-190 670.2 550 65.3
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.2e-190 669.5 540 67.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 2.2e-190 669.5 460 74.3
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.9e-190 669.1 540 67.2
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 2.9e-190 669.1 537 65.0
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.2e-189 665.2 540 66.7
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.2e-189 664.5 540 66.5
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 2.7e-188 662.5 460 74.3
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 3.6e-188 662.1 547 62.9
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 4.7e-188 661.8 547 63.8
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.0e-187 660.6 460 73.5
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 6.7e-187 657.9 460 73.9
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 6.7e-187 657.9 460 73.5
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 1.5e-186 656.8 460 73.5
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 2.6e-186 656.0 548 62.6
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 2.2e-185 652.9 480 70.6
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 2.4e-184 649.4 599 59.9
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 9.1e-184 647.5 540 61.5
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.5e-183 646.7 460 73.0
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 2.0e-183 646.4 469 71.4
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.3e-182 643.7 552 61.2
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 1.7e-182 643.3 540 63.9
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.4e-181 640.2 548 60.2
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 3.2e-181 639.0 466 70.2
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 7.2e-181 637.9 482 69.1
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.4e-179 633.6 544 63.2
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.8e-179 633.3 550 62.9
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 3.0e-179 632.5 550 62.9
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.5e-178 630.2 543 63.4
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 5.7e-178 628.2 486 66.3
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.7e-177 626.7 539 61.6
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 3.7e-177 625.5 533 62.7
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.4e-176 623.6 540 61.9
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 4.1e-176 622.1 542 63.1
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 1.2e-175 620.5 546 61.9
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.2e-175 620.5 528 62.3
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 2.0e-175 619.8 539 63.3
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.3e-174 617.1 543 61.3
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 2.2e-174 616.3 537 61.6
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 5.0e-174 615.1 436 72.0
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.5e-173 613.6 579 59.8
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 5.5e-173 611.7 527 63.2
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 2.7e-172 609.4 437 70.5
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 1.4e-171 607.1 445 69.9
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 4.0e-171 605.5 571 57.8
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 4.0e-171 605.5 569 58.2
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 4.0e-171 605.5 475 66.5
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 2.0e-170 603.2 553 60.4
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.3e-169 600.5 544 60.5
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 2.8e-169 599.4 532 61.3
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 3.7e-169 599.0 467 65.5
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 1.0e-166 590.9 538 61.5
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 1.0e-166 590.9 536 61.4
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 2.2e-166 589.7 536 61.4
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 5.0e-166 588.6 547 60.1
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 7.2e-165 584.7 536 61.0
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.6e-164 583.6 536 60.8
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.1e-160 570.9 454 64.5
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 7.7e-159 564.7 418 67.5
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 2.9e-158 562.8 550 56.7
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 3.8e-158 562.4 454 66.5
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 2.0e-151 540.0 566 54.4
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 3.9e-150 535.8 540 57.6
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.1e-149 534.3 556 55.4
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 8.0e-148 528.1 567 55.7
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.3e-147 526.6 478 57.9
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 1.5e-146 523.9 468 60.5
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.7e-145 520.4 669 46.5
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.1e-144 517.7 299 85.3
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 4.6e-143 512.3 368 71.7
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 8.6e-142 508.1 380 71.6
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 8.6e-142 508.1 439 58.5
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.1e-141 507.7 410 63.7
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.2e-140 504.2 461 59.7
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.4e-136 490.7 476 54.0
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 6.0e-111 405.6 444 53.2
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 7.3e-109 398.7 576 45.1
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.4e-107 394.4 313 67.4
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 3.4e-106 389.8 367 54.2
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 6.4e-105 385.6 471 51.8
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 7.4e-93 345.5 259 66.8
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 3.7e-92 343.2 295 57.3
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.3e-75 286.2 257 63.4
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 3.2e-72 276.9 496 36.9
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 7.2e-72 275.8 281 53.4
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 6.3e-68 262.7 326 43.6
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 7.4e-61 239.2 578 31.0
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 9.1e-51 205.7 245 50.2
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.5e-50 203.4 239 53.1
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.4e-35 154.5 120 59.2
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.4e-35 153.3 95 77.9
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 2.0e-34 151.4 171 50.3
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 2.5e-32 144.4 205 35.1
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 1.4e-27 128.6 80 76.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 3.6e-23 114.0 62 82.3
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.3e-16 90.9 159 44.7
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 8.1e-15 86.3 84 54.8
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 2.4e-06 58.2 49 63.3


User provided reference genes

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