Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 8.5e-171 603.6 306 100.0
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 3.2e-109 399.1 294 72.1
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.2e-109 399.1 292 72.6
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.8e-94 349.0 290 62.8
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 2.1e-92 343.2 290 63.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 6.6e-91 338.2 292 66.1
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.6e-89 333.6 290 61.4
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 2.8e-89 332.8 297 62.3
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.4e-88 330.5 294 59.2
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 7.6e-87 324.7 295 62.0
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.9e-85 320.1 303 57.4
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 2.7e-84 316.2 290 56.9
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 7.8e-84 314.7 285 58.9
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.3e-83 313.9 294 57.8
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-83 313.9 300 59.7
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 6.6e-83 311.6 293 56.0
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.1e-82 310.8 292 55.5
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.5e-82 309.7 295 58.3
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.5e-82 309.7 290 59.3
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 4.3e-82 308.9 300 55.7
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.8e-81 306.2 299 56.2
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.1e-80 304.3 294 57.1
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.4e-80 303.9 298 55.4
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.0e-80 302.4 299 56.2
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 4.0e-80 302.4 291 55.3
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 5.3e-80 302.0 295 57.3
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.0e-80 301.2 311 56.9
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.5e-79 300.4 305 57.4
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.5e-79 300.4 292 54.8
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.5e-79 300.4 285 53.3
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.4e-79 299.3 311 56.6
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.8e-79 298.5 311 56.6
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 5.8e-79 298.5 302 57.0
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.3e-78 297.4 311 56.3
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.3e-75 286.6 343 51.3
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 4.3e-74 282.3 292 52.1
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 7.4e-74 281.6 239 61.1
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 7.4e-74 281.6 290 51.7
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.6e-74 281.2 288 53.5
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.3e-73 280.8 264 53.8
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 5.3e-72 275.4 290 52.4
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 5.3e-72 275.4 290 52.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 3.4e-71 272.7 294 52.4
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 5.8e-71 271.9 290 52.8
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 7.6e-71 271.6 291 51.5
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.8e-70 269.2 287 51.9
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 6.4e-70 268.5 274 51.8
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.4e-69 267.3 287 50.9
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.4e-69 267.3 287 51.9
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.2e-69 266.2 287 53.0
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 3.5e-68 262.7 291 48.8
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 7.9e-68 261.5 296 48.6
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.3e-67 260.8 301 50.5
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.3e-67 260.8 294 52.0
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.8e-67 260.4 287 50.9
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.8e-67 260.4 290 51.0
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 8.7e-67 258.1 238 56.7
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 8.7e-67 258.1 294 52.0
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 8.7e-67 258.1 296 49.0
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.9e-66 256.9 297 47.1
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 2.5e-66 256.5 286 49.0
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 3.7e-65 252.7 297 47.5
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 4.8e-65 252.3 299 47.8
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.6e-63 246.5 205 62.9
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 6.5e-62 241.9 199 64.3
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 8.4e-62 241.5 298 46.6
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 4.2e-61 239.2 215 58.6
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.1e-60 236.9 292 46.2
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 4.6e-60 235.7 293 48.1
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 7.9e-60 235.0 286 48.6
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.8e-59 233.8 321 47.4
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 2.5e-58 229.9 274 48.2
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 4.8e-57 225.7 173 68.2
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 5.9e-55 218.8 271 44.3
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 6.5e-54 215.3 292 45.2
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.9e-53 213.8 298 41.9
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 9.4e-53 211.5 197 57.9
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 4.6e-52 209.1 269 46.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.0e-51 208.0 288 44.1
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.5e-50 204.1 295 43.7
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 2.2e-49 200.3 273 45.1
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.8e-49 199.1 225 48.4
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 1.8e-48 197.2 301 41.9
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 2.4e-48 196.8 301 41.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 3.1e-48 196.4 273 44.3
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 5.3e-48 195.7 216 51.4
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 6.5e-46 188.7 295 40.3
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 6.5e-46 188.7 226 52.2
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.2e-44 184.5 194 52.1
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 4.4e-42 176.0 173 53.2
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.4e-40 170.2 290 37.9
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 4.1e-40 169.5 289 41.2
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.7e-38 164.1 238 44.5
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 9.4e-37 158.3 245 39.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.3e-35 153.7 247 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.0e-35 153.3 308 33.4
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.3e-33 147.9 231 39.4
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.8e-32 144.1 251 38.6
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 5.9e-31 139.0 309 33.7
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.0e-30 138.3 232 40.1
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 1.7e-30 137.5 256 38.3
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.7e-30 137.5 96 76.0
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.1e-29 134.8 142 50.7
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.9e-29 134.0 150 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 9.4e-29 131.7 254 33.1
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.0e-27 128.3 209 37.8
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.8e-27 127.5 290 31.7
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 4.0e-27 126.3 341 28.7
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.4e-26 123.2 210 37.6
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 7.5e-26 122.1 109 59.6
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.8e-25 120.2 111 59.5
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 4.1e-24 116.3 154 42.9
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.1e-24 116.3 80 77.5
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.1e-24 116.3 80 77.5
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 2.7e-23 113.6 115 53.9
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 5.9e-23 112.5 126 52.4
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 7.7e-23 112.1 79 78.5
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.2e-17 94.0 287 27.9
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.7e-17 93.2 138 39.9
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 4.1e-16 89.7 59 78.0
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.2e-15 88.2 60 73.3
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.6e-15 87.8 94 51.1
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 3.5e-15 86.7 60 71.7
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 1.7e-14 84.3 51 74.5
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.8e-14 83.2 58 74.1
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 6.6e-14 82.4 132 33.3
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 2.4e-08 63.9 187 27.8


User provided reference genes

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