Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 1.1e-75 286.6 141 100.0
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 6.2e-68 260.8 180 76.7
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.7e-57 226.1 173 67.6
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 6.7e-54 214.2 174 62.6
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 4.3e-53 211.5 173 63.0
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 7.4e-53 210.7 167 66.5
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 4.8e-52 208.0 178 59.6
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 4.8e-52 208.0 174 61.5
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 4.8e-52 208.0 175 60.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 6.2e-52 207.6 175 60.6
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.4e-51 206.5 169 63.3
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 9.0e-51 203.8 173 61.8
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.5e-50 203.0 167 62.9
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 7.6e-50 200.7 173 59.5
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.7e-49 199.5 173 58.4
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.7e-49 199.5 173 58.4
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.2e-49 199.1 173 59.0
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 2.9e-49 198.7 173 59.5
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 2.9e-49 198.7 174 58.0
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 8.4e-49 197.2 173 57.8
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.1e-48 196.8 173 57.2
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 3.2e-48 195.3 164 60.4
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 3.2e-48 195.3 173 56.1
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 3.2e-48 195.3 176 57.4
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 3.2e-48 195.3 176 57.4
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 4.2e-48 194.9 178 56.7
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 7.1e-48 194.1 173 58.4
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 9.3e-48 193.7 171 56.7
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 2.1e-47 192.6 173 54.3
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 2.1e-47 192.6 175 57.1
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.6e-47 191.4 173 56.6
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 4.6e-47 191.4 169 55.0
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 6.0e-47 191.0 173 54.3
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 6.0e-47 191.0 163 60.7
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 2.3e-46 189.1 173 54.9
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 3.0e-46 188.7 165 58.2
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 5.1e-46 188.0 173 56.6
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.5e-45 186.4 173 53.2
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.5e-45 185.7 169 56.2
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 2.5e-45 185.7 177 53.1
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.3e-45 185.3 168 54.8
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 5.6e-45 184.5 173 53.8
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 5.6e-45 184.5 175 53.7
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 9.6e-45 183.7 173 53.2
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.3e-44 183.3 171 51.5
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 4.8e-44 181.4 168 53.6
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 1.8e-43 179.5 173 52.6
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.8e-43 179.5 173 52.6
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 3.1e-43 178.7 173 50.9
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 4.0e-43 178.3 170 53.5
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 5.3e-43 177.9 173 52.0
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 5.3e-43 177.9 173 51.4
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 9.0e-43 177.2 169 53.3
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.5e-42 176.4 159 57.2
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.5e-42 176.4 159 57.2
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.5e-42 176.4 159 57.2
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 2.0e-42 176.0 175 49.7
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 2.0e-42 176.0 173 50.3
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.6e-42 175.6 179 50.8
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 2.6e-42 175.6 173 50.9
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 4.5e-42 174.9 173 50.3
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-41 173.7 159 56.6
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-41 173.7 159 56.6
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-41 173.7 159 56.6
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 2.2e-41 172.6 172 50.0
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 6.5e-41 171.0 178 49.4
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 7.1e-40 167.5 168 51.2
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 6.0e-39 164.5 169 48.5
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 5.1e-38 161.4 175 50.3
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 4.8e-36 154.8 168 45.2
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.4e-34 148.7 91 69.2
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 3.4e-34 148.7 168 46.4
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.3e-33 146.7 171 43.9
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.1e-32 143.7 167 49.7
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.0e-30 137.1 135 47.4
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 3.0e-30 135.6 173 39.3
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 7.4e-29 131.0 174 42.5
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 2.2e-28 129.4 96 59.4
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 2.4e-27 125.9 96 53.1
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 2.0e-26 122.9 60 88.3
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 5.0e-25 118.2 168 36.9
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 5.5e-24 114.8 132 47.7
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.2e-23 113.6 126 48.4
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 2.7e-23 112.5 132 47.0
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 1.8e-22 109.8 129 45.7
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 8.8e-22 107.5 81 53.1
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 2.6e-21 105.9 130 43.8
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 2.2e-20 102.8 123 41.5
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 4.1e-19 98.6 56 71.4
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.1e-16 90.5 58 67.2
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 3.9e-14 82.0 168 29.2
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 2.8e-12 75.9 114 44.7
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 2.6e-10 69.3 51 51.0
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 7.2e-08 61.2 35 77.1
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 2.1e-07 59.7 164 26.2
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 8.0e-07 57.8 35 74.3
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 5.2e-06 55.1 35 71.4


User provided reference genes

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