Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 4.2e-170 601.3 307 100.0
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 7.0e-149 530.8 300 93.0
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 4.9e-118 428.3 290 75.9
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 6.6e-115 417.9 290 73.8
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 2.1e-113 412.9 301 70.8
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 1.7e-99 366.7 301 66.4
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 6.6e-91 338.2 301 61.8
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.5e-90 337.0 305 60.7
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 2.5e-90 336.3 301 61.1
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 1.4e-88 330.5 299 60.2
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 4.2e-85 318.9 302 59.9
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 2.1e-84 316.6 280 60.4
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.5e-82 309.7 280 60.0
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.4e-82 308.1 282 58.9
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 9.6e-82 307.8 280 59.6
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.6e-81 307.0 280 59.6
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.8e-80 303.5 280 59.3
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 2.4e-80 303.1 302 58.3
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 2.4e-80 303.1 309 58.3
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 4.0e-80 302.4 302 57.6
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 6.9e-80 301.6 302 55.6
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 6.9e-80 301.6 297 58.2
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 9.0e-80 301.2 306 58.5
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 3.4e-79 299.3 321 55.8
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 7.6e-79 298.1 301 57.1
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.3e-78 297.4 301 56.8
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.2e-78 296.6 303 56.4
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 6.5e-78 295.0 303 54.8
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 1.1e-77 294.3 298 55.4
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 1.4e-77 293.9 304 55.6
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 3.2e-77 292.7 293 58.0
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 9.3e-77 291.2 279 58.1
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.2e-76 290.8 278 58.3
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 1.3e-75 287.3 278 57.9
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 3.0e-75 286.2 303 55.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 3.0e-75 286.2 311 54.0
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 1.1e-74 284.3 206 68.4
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.5e-74 283.9 308 55.2
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 1.9e-74 283.5 302 55.3
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 4.3e-74 282.3 303 54.1
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 4.3e-74 282.3 297 52.9
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 2.8e-73 279.6 274 55.8
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 6.3e-73 278.5 295 54.2
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 4.1e-72 275.8 284 55.3
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 5.3e-72 275.4 352 47.4
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 9.0e-72 274.6 352 47.7
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.2e-71 274.2 196 70.4
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.5e-71 273.9 302 53.3
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.5e-71 273.9 274 55.1
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 2.6e-71 273.1 300 52.3
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 5.9e-71 271.9 271 55.4
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 3.8e-70 269.2 203 69.5
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 6.5e-70 268.5 298 51.7
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 8.5e-70 268.1 300 54.3
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 1.1e-69 267.7 298 51.3
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 3.2e-69 266.2 302 51.0
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 3.2e-69 266.2 302 54.3
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 2.7e-68 263.1 278 55.0
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 2.7e-68 263.1 260 53.8
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 4.6e-68 262.3 297 49.5
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 7.9e-68 261.5 301 51.8
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 7.9e-68 261.5 303 53.5
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 8.7e-67 258.1 301 50.5
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.9e-66 256.9 302 51.7
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 2.5e-66 256.5 304 50.3
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 7.4e-66 255.0 301 51.5
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 9.7e-66 254.6 322 49.7
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.6e-65 253.8 302 51.3
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 3.7e-65 252.7 302 51.0
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 3.7e-65 252.7 302 51.0
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.8e-64 250.4 302 50.7
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 1.2e-63 247.7 277 51.3
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 5.9e-63 245.4 287 49.8
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 5.9e-63 245.4 326 46.3
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 8.5e-62 241.5 302 50.3
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 1.4e-61 240.7 189 66.1
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 2.7e-60 236.5 323 46.4
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 7.9e-60 235.0 309 47.2
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.3e-58 229.6 263 49.0
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 9.7e-58 228.0 309 45.3
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 6.3e-57 225.3 267 48.3
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.1e-56 224.6 291 44.0
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.4e-56 224.2 192 62.0
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.8e-56 223.8 311 45.3
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 2.4e-56 223.4 292 48.3
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.5e-55 220.7 311 46.6
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.4e-55 219.5 201 56.7
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 4.5e-55 219.2 313 45.4
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.5e-55 219.2 262 45.8
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.3e-54 217.6 294 48.3
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 2.9e-54 216.5 295 46.8
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.9e-54 216.5 357 40.6
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 3.8e-54 216.1 290 47.2
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.4e-53 214.2 305 44.3
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.4e-53 214.2 317 42.0
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.5e-53 213.4 171 63.7
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.4e-51 207.6 305 44.6
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.5e-50 204.1 262 45.0
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 3.3e-50 203.0 240 52.1
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 4.8e-49 199.1 262 44.3
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 8.5e-46 188.3 207 49.8
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.2e-44 184.5 299 41.1
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.2e-41 173.7 292 43.8
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 6.5e-38 162.2 305 37.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.2e-28 131.3 207 39.1
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.1e-28 130.6 123 56.1
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 8.0e-28 128.6 258 34.9
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 4.4e-26 122.9 173 39.3
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.7e-22 110.9 137 40.1
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 4.1e-16 89.7 71 60.6
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 3.0e-14 83.6 61 67.2
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.1e-11 73.6 273 27.1
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 2.6e-10 70.5 185 29.2


User provided reference genes

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