Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 2481.8 1309 100.0
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1658.3 1341 70.1
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1427.5 963 76.2
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 0.0e+00 1401.3 1761 51.8
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1401.3 1350 58.7
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1387.1 1169 64.9
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1370.1 1110 65.5
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1358.6 1344 58.0
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1323.9 1140 62.6
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1318.5 1351 57.1
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1313.5 1126 63.1
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1312.7 1134 64.0
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1312.7 1328 56.9
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1309.7 1351 56.8
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1308.1 1351 56.8
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1307.4 1191 61.0
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1299.3 1339 55.9
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1295.0 1108 62.3
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1293.9 1140 62.1
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1287.3 1340 56.9
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1286.6 1115 62.8
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1286.6 1259 58.4
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1280.4 1295 55.5
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1278.1 1094 63.6
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1274.6 1184 59.1
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1261.5 1381 53.0
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1249.2 1330 56.0
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1248.0 1120 61.2
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1246.9 1166 58.7
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1246.1 1167 59.1
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1241.5 1274 55.4
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1240.7 1145 60.2
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1236.9 1136 60.4
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1233.8 1129 59.6
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1232.6 1124 61.0
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1232.2 1259 57.1
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1228.0 1172 59.1
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1220.7 1254 55.6
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1218.0 1171 58.0
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1217.6 1146 60.3
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 0.0e+00 1207.2 1216 56.2
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1186.8 1182 57.4
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1184.5 1372 52.0
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1179.5 1118 58.8
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1175.6 1318 53.6
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1174.1 1513 47.8
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1172.9 1174 56.4
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1161.7 1098 58.6
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1160.6 1122 58.3
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 0.0e+00 1159.1 1200 55.8
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 0.0e+00 1151.3 1126 58.3
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1146.7 1091 58.3
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 1139.0 1073 58.2
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 0.0e+00 1138.3 1153 56.6
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 1137.5 1220 53.9
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1135.2 1075 57.3
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1132.9 1166 55.1
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 0.0e+00 1132.1 1130 57.4
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 0.0e+00 1130.9 1046 57.9
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 0.0e+00 1128.6 991 63.7
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 1128.2 1097 56.2
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 0.0e+00 1126.3 1096 56.6
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 0.0e+00 1121.3 1189 55.3
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 0.0e+00 1118.6 1076 57.3
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 0.0e+00 1105.1 1142 53.6
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 0.0e+00 1097.8 1205 51.0
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1097.4 1111 55.1
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 0.0e+00 1095.1 1076 55.8
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 0.0e+00 1094.7 930 63.2
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 0.0e+00 1088.2 1118 56.0
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1085.5 1095 56.2
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 0.0e+00 1084.3 1162 52.3
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1082.8 1098 55.8
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 0.0e+00 1082.8 1098 55.8
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 0.0e+00 1082.0 1097 55.9
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1079.7 1098 55.6
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 0.0e+00 1075.8 1146 52.3
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 6.3e-311 1071.2 1347 48.4
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 8.1e-311 1070.8 1384 46.9
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.8e-310 1069.7 1078 55.7
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 4.4e-309 1065.1 1099 54.9
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 3.7e-308 1062.0 1388 47.3
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 8.3e-308 1060.8 1170 52.1
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 4.3e-304 1048.5 926 60.9
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.4e-302 1043.5 1145 51.4
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 5.7e-301 1038.1 990 58.0
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 3.7e-300 1035.4 1053 58.1
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.1e-299 1031.9 1189 49.8
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 9.5e-296 1020.8 1120 52.5
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 7.3e-288 994.6 1160 52.2
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 3.7e-284 982.2 1003 56.5
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.3e-260 904.0 1367 43.6
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.6e-258 897.1 1177 47.1
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 4.6e-258 895.6 1134 46.8
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.6e-255 887.1 1007 50.0
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 2.6e-253 879.8 1194 45.8
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 1.1e-243 847.8 1308 41.8
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 2.9e-236 823.2 966 49.1
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 1.1e-232 811.2 1113 44.1
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 6.5e-228 795.4 550 73.5
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.1e-226 790.4 513 76.6
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.0e-217 761.5 941 49.4
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.0e-217 761.5 1040 45.7
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.3e-217 760.4 1130 43.1
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.3e-207 725.7 521 69.5
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.8e-178 630.6 981 39.0
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 5.4e-166 589.7 1126 35.8
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 9.6e-155 552.4 1188 34.3
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 4.2e-150 537.0 805 41.1
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.7e-148 531.6 300 93.0
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 3.7e-114 417.5 935 30.8
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.4e-100 372.5 522 42.5
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.0e-89 333.6 246 69.9
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 8.0e-61 240.4 178 70.8
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.5e-59 236.1 130 93.1
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.6e-56 224.6 173 64.7
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-51 209.9 232 47.0
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 2.2e-50 205.7 137 76.6
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 3.1e-36 158.7 614 26.2
QL09p011945 Quercus lobata HOM05D005400 ORTHO05D043781 1.5e-35 156.4 140 63.6
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.9e-34 152.1 105 68.6
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.0e-31 143.7 97 75.3
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.5e-30 139.8 413 33.7
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 5.6e-30 137.9 84 73.8
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.3e-29 136.7 124 57.3
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.6e-29 135.2 106 67.9
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 3.6e-29 135.2 234 36.3
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.6e-22 110.5 120 52.5
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 4.8e-21 108.2 132 47.7
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.2e-21 107.8 125 51.2
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 1.5e-19 103.2 146 43.2
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 4.5e-19 101.7 115 51.3
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.1e-17 97.1 121 47.1
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 5.5e-17 94.7 71 60.6
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 6.7e-15 87.8 95 49.5
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 1.3e-10 73.6 84 51.2
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.5e-09 69.3 87 41.4
Cfa000852 Carpinus fangiana HOM05D005400 ORTHO05D043781 1.2e-08 67.0 140 37.1
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 4.6e-08 65.1 54 59.3
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.0e-07 62.4 40 70.0
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 3.9e-07 62.0 70 45.7
Atru.chr1.314 Acer truncatum HOM05D005400 ORTHO05D006668 5.7e-06 58.2 99 42.4
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 9.7e-06 57.4 53 50.9


User provided reference genes

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