Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 0.0e+00 2002.6 1041 100.0
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 0.0e+00 1507.3 1034 77.1
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 0.0e+00 1385.2 1027 72.1
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 0.0e+00 1340.9 1034 71.5
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 0.0e+00 1130.9 1036 61.5
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 0.0e+00 1119.4 1032 61.1
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 0.0e+00 1090.5 1031 60.0
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 0.0e+00 1085.1 1035 59.1
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 3.1e-305 1052.0 1023 57.9
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 1.1e-302 1043.5 1023 57.2
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 2.4e-302 1042.3 1028 58.0
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 3.6e-298 1028.5 1032 55.8
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 1.6e-293 1013.1 1036 57.0
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 6.0e-293 1011.1 1024 56.5
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 2.6e-288 995.7 1034 56.2
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 1.1e-286 990.3 1036 56.1
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.7e-285 985.7 1036 56.1
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.5e-283 979.9 1043 55.4
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.1e-282 976.1 1040 55.3
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.8e-282 975.7 1040 55.4
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 4.0e-281 971.8 1088 53.5
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.1e-277 959.5 1030 55.0
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 4.6e-277 958.4 1030 55.1
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 4.9e-271 938.3 912 58.6
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 9.6e-267 924.1 1029 53.9
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 2.0e-264 916.4 890 58.0
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 5.8e-264 914.8 1024 53.9
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.9e-257 891.3 1030 52.2
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.8e-244 850.1 1034 50.5
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 1.8e-241 840.1 1033 49.1
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 1.0e-239 834.3 1037 48.7
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.8e-239 832.4 834 57.2
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 4.2e-238 828.9 1036 49.5
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.8e-236 823.5 1080 47.8
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 6.7e-236 821.6 1080 48.0
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.5e-232 810.4 1031 49.1
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 2.9e-231 806.2 1025 48.8
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 3.8e-231 805.8 984 49.4
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 5.2e-228 795.4 1039 47.9
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.3e-226 790.8 803 56.0
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 5.0e-223 778.9 1032 47.0
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 3.0e-220 769.6 1024 46.9
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.7e-218 763.8 910 50.8
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 7.7e-216 755.0 1038 47.5
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 2.5e-214 750.0 1035 46.3
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.2e-214 749.6 1034 46.2
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 5.7e-211 738.8 1030 45.5
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 9.8e-211 738.0 1039 45.8
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 4.9e-210 735.7 1033 45.2
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 9.1e-209 731.5 1040 46.3
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 3.0e-204 716.5 1034 44.3
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.1e-201 708.0 773 52.7
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 7.0e-201 705.3 1030 44.8
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 4.3e-198 696.0 1035 44.1
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.2e-197 694.5 1034 44.8
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.1e-197 693.7 1048 43.0
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 1.4e-196 691.0 1043 43.9
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 8.9e-196 688.3 1036 42.8
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 4.4e-195 686.0 1047 43.1
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 9.2e-193 678.3 1026 42.8
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 2.3e-191 673.7 1026 43.5
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.1e-190 671.4 1030 43.7
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 1.5e-190 671.0 1031 43.8
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.6e-189 667.5 981 44.5
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 1.1e-188 664.8 1030 42.4
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 1.8e-188 664.1 1027 42.5
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 2.6e-187 660.2 1030 41.7
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 3.4e-187 659.8 1021 43.5
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 6.4e-186 655.6 1032 42.6
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.9e-185 654.1 1039 43.3
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 2.4e-185 653.7 1030 42.2
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 4.1e-185 652.9 1040 43.1
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 6.0e-184 649.0 1031 41.2
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 7.8e-184 648.7 1025 42.5
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 3.9e-183 646.4 1025 42.0
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 3.9e-183 646.4 1034 42.0
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 5.6e-182 642.5 1025 42.1
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 2.1e-181 640.6 1025 42.0
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 2.8e-181 640.2 1025 41.8
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.5e-179 634.4 1034 42.6
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 2.0e-179 634.0 1022 41.0
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 2.0e-179 634.0 1022 41.0
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 2.9e-178 630.2 1035 42.8
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.4e-177 627.9 909 44.9
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.9e-177 627.5 1024 42.4
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 9.2e-177 625.2 1026 41.8
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 1.2e-176 624.8 999 41.4
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.5e-176 623.2 1033 41.6
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 6.0e-176 622.5 1036 42.3
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 3.3e-174 616.7 1037 41.3
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 4.7e-173 612.8 900 42.7
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.0e-155 554.3 941 41.9
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 9.9e-155 552.0 679 49.0
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 1.3e-149 535.0 1032 38.7
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 3.5e-144 516.9 978 38.5
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.0e-143 515.4 1032 38.4
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 6.7e-135 486.1 1015 35.4
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.2e-131 475.3 628 45.2
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.9e-130 470.7 474 55.3
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.8e-119 434.9 985 35.0
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 3.7e-117 427.2 868 36.1
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 3.5e-115 420.6 615 47.0
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 3.0e-111 407.5 492 51.2
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.2e-110 405.6 1056 33.4
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 5.5e-105 386.7 493 49.5
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 4.1e-100 370.5 621 37.8
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 7.7e-99 366.3 410 53.9
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.2e-93 348.2 445 51.2
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 2.2e-93 348.2 389 53.2
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 1.1e-89 335.9 1028 31.1
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 5.2e-87 327.0 1072 30.7
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 2.0e-83 315.1 330 52.1
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 3.0e-82 311.2 1095 28.9
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.7e-69 268.9 258 60.9
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 4.1e-68 264.2 979 28.5
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 8.6e-66 256.5 308 49.0
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 9.6e-57 226.5 325 46.2
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 7.8e-51 206.8 261 51.0
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 7.6e-46 190.3 503 34.2
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 3.7e-40 171.4 379 36.1
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 9.3e-36 156.8 1038 24.5
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.9e-33 149.1 172 50.6
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.4e-20 106.3 194 39.7
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 3.6e-19 101.7 90 70.0
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 4.1e-15 88.2 187 37.4
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 1.2e-11 76.6 186 36.0
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 3.9e-10 71.6 1095 20.5
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 6.7e-10 70.9 132 42.4
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 8.8e-10 70.5 339 27.1
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 1.5e-09 69.7 185 30.3
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 1.7e-08 66.2 74 52.7
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 2.2e-08 65.9 186 33.9


User provided reference genes

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