Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.8e-114 416.0 218 100.0
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 5.0e-93 344.7 225 80.9
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 3.6e-91 338.6 219 80.8
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.4e-90 336.7 219 80.8
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 5.2e-90 334.7 222 79.7
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 7.5e-89 330.9 225 78.7
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.7e-88 329.7 222 78.8
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.2e-88 329.3 214 79.0
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 2.9e-88 328.9 222 77.9
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 6.4e-88 327.8 234 74.8
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 1.9e-87 326.2 222 80.2
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 1.6e-86 323.2 232 74.6
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.3e-85 319.3 236 74.2
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 3.0e-85 318.9 229 73.8
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.1e-85 318.2 221 77.4
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.5e-84 316.6 219 75.3
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 4.3e-84 315.1 224 77.2
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 4.3e-84 315.1 222 75.2
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 5.6e-84 314.7 222 76.1
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 7.3e-84 314.3 225 74.2
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 8.1e-83 310.8 222 71.6
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.1e-82 310.5 221 75.6
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.8e-82 309.7 221 75.1
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.8e-82 309.7 222 74.3
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.3e-82 309.3 221 75.1
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 2.3e-82 309.3 189 85.2
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.1e-82 308.9 221 75.1
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.2e-81 307.0 224 74.6
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 3.4e-81 305.4 225 72.9
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 3.4e-81 305.4 223 74.9
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 9.9e-81 303.9 221 74.2
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.3e-80 303.5 219 75.8
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 2.2e-80 302.8 220 75.0
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 2.2e-80 302.8 236 69.9
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 2.9e-80 302.4 215 75.3
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 3.8e-80 302.0 217 74.7
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 3.8e-80 302.0 233 72.1
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 8.4e-80 300.8 229 72.1
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.9e-79 299.7 227 72.7
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 3.2e-79 298.9 220 73.6
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 3.2e-79 298.9 220 73.6
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 3.2e-79 298.9 228 68.9
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 4.6e-78 295.0 229 69.9
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.0e-77 293.9 225 70.7
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 3.0e-77 292.4 230 69.1
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 5.1e-77 291.6 208 72.1
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 6.6e-77 291.2 208 72.1
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 8.6e-77 290.8 221 70.1
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 1.1e-76 290.4 217 72.4
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.1e-76 290.4 220 69.1
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.1e-76 290.4 220 69.1
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.5e-76 290.0 197 74.6
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.5e-76 290.0 208 71.6
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 5.6e-76 288.1 221 71.9
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 2.8e-75 285.8 221 70.6
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 1.1e-74 283.9 219 69.4
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 1.4e-74 283.5 219 69.4
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 1.4e-74 283.5 222 70.3
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 8.9e-74 280.8 220 67.7
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.4e-73 278.9 221 70.1
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 3.4e-73 278.9 171 84.8
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 7.6e-73 277.7 206 70.9
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.9e-72 275.8 222 66.7
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 6.4e-72 274.6 220 67.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 1.4e-71 273.5 226 68.6
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.9e-71 273.1 222 65.8
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.6e-70 270.0 214 66.4
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 2.1e-70 269.6 194 74.2
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 1.3e-69 266.9 215 66.0
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.7e-69 266.5 207 69.1
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 5.1e-69 265.0 215 64.2
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 6.6e-69 264.6 218 63.8
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.5e-68 263.5 192 72.9
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.5e-68 262.7 181 75.7
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 3.3e-68 262.3 212 66.0
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 4.3e-68 261.9 214 65.4
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 7.3e-68 261.2 201 66.7
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 9.6e-68 260.8 222 63.1
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 1.6e-67 260.0 185 71.9
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.8e-67 259.2 192 71.9
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 4.8e-67 258.5 216 63.0
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.1e-66 257.3 197 69.5
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.2e-65 253.8 211 63.5
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 7.6e-65 251.1 190 73.7
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.2e-64 249.6 177 71.2
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 2.2e-64 249.6 218 61.5
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 4.9e-64 248.4 167 76.0
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 4.9e-64 248.4 219 61.2
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 1.1e-63 247.3 223 60.5
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 7.1e-63 244.6 208 63.5
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.2e-62 243.8 219 58.9
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.0e-61 240.7 216 60.6
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.0e-61 240.7 216 60.6
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.0e-61 240.7 216 60.6
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.3e-61 240.4 175 68.0
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.3e-61 240.4 176 68.8
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 6.7e-61 238.0 214 58.4
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 6.7e-61 238.0 214 58.4
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.7e-61 238.0 237 59.5
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.7e-61 238.0 237 59.5
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 8.7e-61 237.7 218 60.1
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.3e-60 235.7 221 61.1
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 6.2e-59 231.5 156 76.9
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 6.2e-59 231.5 156 76.9
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 8.1e-59 231.1 216 60.2
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.1e-58 230.7 156 76.3
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 1.8e-58 229.9 219 57.1
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.0e-57 226.5 156 73.7
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 9.9e-57 224.2 219 60.7
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.9e-55 219.9 155 73.5
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 3.2e-55 219.2 156 72.4
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 1.0e-53 214.2 189 57.1
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.0e-53 214.2 155 71.0
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 1.3e-53 213.8 155 72.3
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 3.0e-53 212.6 156 67.9
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.1e-52 210.7 156 69.9
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 5.6e-52 208.4 202 54.5
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 5.6e-52 208.4 192 57.8
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 9.6e-52 207.6 156 66.0
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.3e-51 207.2 174 64.4
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 2.1e-51 206.5 155 67.1
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 6.2e-51 204.9 155 68.4
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.4e-50 203.8 155 71.6
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 5.3e-50 201.8 155 67.7
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.5e-49 200.3 136 77.2
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 3.4e-49 199.1 180 57.2
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.3e-48 197.2 171 60.2
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 2.9e-48 196.1 147 68.0
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 4.9e-48 195.3 149 69.8
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.1e-47 194.1 142 76.1
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 4.2e-47 192.2 212 52.4
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 2.7e-46 189.5 136 72.1
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 6.0e-46 188.3 182 54.4
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.8e-45 186.8 177 61.6
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.8e-45 186.8 177 61.6
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.3e-45 186.4 117 86.3
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 5.1e-45 185.3 125 79.2
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 7.9e-38 161.4 136 62.5
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 6.7e-37 158.3 105 79.0
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 1.5e-36 157.1 220 46.4
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.9e-36 156.8 105 78.1
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 9.7e-36 154.5 203 47.3
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 9.7e-36 154.5 157 51.6
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 8.2e-35 151.4 215 46.0
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.2e-33 147.5 108 73.1
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 3.7e-27 125.9 87 67.8
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 1.3e-19 100.9 156 43.6
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.1e-18 97.8 204 32.8
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.5e-15 87.4 103 51.5
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.2e-15 86.3 103 49.5
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 9.4e-15 84.7 80 52.5


User provided reference genes

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