Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 7.2e-40 166.8 83 100.0
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.2e-24 114.4 82 69.5
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.2e-24 113.6 82 69.5
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.0e-23 110.2 82 67.1
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.2e-20 102.1 85 68.2
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 6.3e-20 100.5 83 66.3
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 6.3e-20 100.5 82 68.3
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 8.2e-20 100.1 87 64.4
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.1e-19 99.8 82 63.4
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.1e-19 99.8 81 66.7
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.8e-19 99.0 78 69.2
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.4e-19 98.6 77 67.5
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.1e-19 98.2 85 61.2
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.1e-19 97.8 81 64.2
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.3e-19 97.4 85 60.0
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 7.0e-19 97.1 86 58.1
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 9.1e-19 96.7 75 70.7
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.6e-18 95.9 79 65.8
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.6e-18 95.9 88 63.6
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 3.5e-18 94.7 80 66.2
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.5e-18 94.7 82 62.2
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 4.5e-18 94.4 80 63.8
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.5e-18 94.4 80 66.2
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 4.5e-18 94.4 82 62.2
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.5e-18 94.4 93 60.2
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 7.7e-18 93.6 75 68.0
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-17 93.2 91 53.8
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.0e-17 93.2 93 60.2
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.3e-17 92.8 82 63.4
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 2.2e-17 92.0 76 65.8
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.2e-17 92.0 82 67.1
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.2e-17 92.0 81 64.2
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.9e-17 91.7 93 59.1
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.9e-17 91.7 80 65.0
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 3.8e-17 91.3 75 66.7
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.8e-17 91.3 75 66.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.8e-17 91.3 81 60.5
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 5.0e-17 90.9 80 61.2
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 5.0e-17 90.9 80 60.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 6.5e-17 90.5 82 59.8
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 8.5e-17 90.1 75 64.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.1e-16 89.7 75 64.0
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.5e-16 88.6 84 59.5
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 4.2e-16 87.8 75 62.7
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.5e-16 87.4 81 61.7
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 5.5e-16 87.4 82 59.8
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 5.5e-16 87.4 80 63.8
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 5.5e-16 87.4 87 54.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 9.4e-16 86.7 82 58.5
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.2e-15 86.3 78 61.5
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.2e-15 86.3 84 58.3
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.6e-15 85.9 75 62.7
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.1e-15 85.5 79 59.5
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 3.6e-15 84.7 80 55.0
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 4.7e-15 84.3 77 54.5
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 4.7e-15 84.3 87 52.9
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.0e-14 83.2 81 56.8
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.0e-14 83.2 77 59.7
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.8e-14 82.4 81 59.3
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 1.8e-14 82.4 81 56.8
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.3e-14 82.0 92 48.9
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.0e-14 81.6 75 58.7
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 3.0e-14 81.6 83 51.8
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 4.0e-14 81.3 75 53.3
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 4.0e-14 81.3 76 56.6
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 6.8e-14 80.5 78 56.4
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 6.8e-14 80.5 77 58.4
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.8e-14 80.5 76 57.9
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 6.8e-14 80.5 82 57.3
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 8.8e-14 80.1 75 64.0
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.8e-14 80.1 75 58.7
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.2e-13 79.7 76 56.6
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.0e-13 79.0 77 57.1
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.0e-13 79.0 77 58.4
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.0e-13 79.0 77 57.1
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 2.0e-13 79.0 88 53.4
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 2.0e-13 79.0 75 61.3
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.6e-13 78.6 75 60.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.6e-13 78.6 75 60.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 2.6e-13 78.6 74 59.5
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.6e-13 78.6 75 58.7
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 3.4e-13 78.2 83 53.0
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 3.4e-13 78.2 78 57.7
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.4e-13 78.2 78 57.7
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 3.4e-13 78.2 82 52.4
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.4e-13 78.2 80 58.8
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 3.4e-13 78.2 82 56.1
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 5.7e-13 77.4 81 55.6
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 5.7e-13 77.4 75 58.7
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 7.5e-13 77.0 75 58.7
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 7.5e-13 77.0 74 59.5
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 7.5e-13 77.0 82 52.4
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 9.8e-13 76.6 75 56.0
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.3e-12 76.3 77 54.5
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 1.3e-12 76.3 58 67.2
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 1.7e-12 75.9 56 69.6
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 2.2e-12 75.5 56 69.6
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 2.8e-12 75.1 77 55.8
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 2.8e-12 75.1 77 55.8
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.8e-12 74.3 76 55.3
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.8e-12 74.3 89 47.2
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 4.8e-12 74.3 71 60.6
Prupe.2G311800 Prunus persica HOM05D004051 ORTHO05D004480 6.3e-12 73.9 62 61.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 6.3e-12 73.9 79 55.7
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 8.3e-12 73.6 81 54.3
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 8.3e-12 73.6 75 56.0
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 8.3e-12 73.6 75 56.0
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.1e-11 73.2 82 51.2
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.1e-11 73.2 75 56.0
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.4e-11 72.8 78 56.4
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.4e-11 72.8 81 54.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.4e-11 72.8 76 51.3
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.4e-11 72.8 75 49.3
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.4e-11 72.8 75 49.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.4e-11 72.8 78 52.6
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.8e-11 72.4 76 51.3
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 2.4e-11 72.0 73 54.8
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.4e-11 72.0 82 50.0
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 4.1e-11 71.2 81 49.4
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.1e-11 71.2 76 51.3
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 4.1e-11 71.2 75 52.0
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 4.1e-11 71.2 79 50.6
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 5.4e-11 70.9 74 60.8
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 5.4e-11 70.9 74 60.8
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 5.4e-11 70.9 75 53.3
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 5.4e-11 70.9 83 50.6
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 7.0e-11 70.5 79 51.9
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 7.0e-11 70.5 78 50.0
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 9.1e-11 70.1 79 53.2
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.2e-10 69.7 75 57.3
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.6e-10 69.3 73 54.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.6e-10 69.3 79 53.2
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.0e-10 68.9 72 56.9
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 2.7e-10 68.6 85 48.2
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.7e-10 68.6 156 37.2
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 2.7e-10 68.6 75 50.7
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 3.5e-10 68.2 77 53.2
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 3.5e-10 68.2 79 53.2
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.5e-10 68.2 79 51.9
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.5e-10 67.8 74 56.8
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 4.5e-10 67.8 67 58.2
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 4.5e-10 67.8 76 53.9
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.5e-10 67.8 74 55.4
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.9e-10 67.4 76 53.9
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 5.9e-10 67.4 76 53.9
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 5.9e-10 67.4 76 48.7
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 5.9e-10 67.4 84 50.0
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.0e-09 66.6 41 78.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.7e-09 65.9 77 50.6
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.7e-09 65.9 73 54.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.2e-09 65.5 79 48.1
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 2.9e-09 65.1 80 51.2
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 3.8e-09 64.7 75 46.7
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-09 64.3 75 48.0
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 8.5e-09 63.5 74 47.3
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.1e-08 63.2 78 51.3
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.5e-08 62.8 59 61.0
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.5e-08 62.8 77 51.9
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.9e-08 62.4 71 46.5
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.5e-08 62.0 54 59.3
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 2.5e-08 62.0 93 40.9
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.2e-08 61.6 83 48.2
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 4.2e-08 61.2 83 47.0
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 5.5e-08 60.8 76 48.7
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 5.5e-08 60.8 83 48.2
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-07 59.7 74 48.6
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.2e-07 59.7 76 47.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.6e-07 59.3 81 48.1
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.1e-07 58.9 74 48.6
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 2.1e-07 58.9 61 57.4
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 2.1e-07 58.9 83 41.0
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 2.1e-07 58.9 77 48.1
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.7e-07 57.8 85 47.1
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 6.1e-07 57.4 93 38.7
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.0e-06 56.6 78 48.7
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 6.8e-06 53.9 54 57.4
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 8.8e-06 53.5 57 56.1


User provided reference genes

Program Settings