Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 4.0e-81 304.7 151 100.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 4.0e-81 304.7 151 100.0
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 6.4e-63 244.2 135 88.9
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.1e-62 243.4 127 92.9
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 7.1e-62 240.7 127 92.1
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 7.4e-59 230.7 127 89.0
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.3e-58 229.9 127 86.6
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 2.1e-58 229.2 125 88.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.8e-58 228.8 127 85.0
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 4.8e-58 228.0 124 87.1
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.8e-58 228.0 127 87.4
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.2e-58 227.6 137 81.0
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 8.1e-58 227.3 126 86.5
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 8.1e-58 227.3 124 87.1
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.4e-57 226.5 127 85.0
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.8e-57 226.1 127 85.0
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.8e-57 226.1 127 85.0
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 2.4e-57 225.7 127 83.5
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 3.1e-57 225.3 134 80.6
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 4.0e-57 224.9 127 85.8
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.0e-57 224.9 137 80.3
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 6.9e-57 224.2 127 84.3
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 9.0e-57 223.8 127 85.8
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.2e-56 223.4 127 83.5
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-56 223.4 127 85.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-56 223.4 127 85.0
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.2e-56 223.4 127 85.0
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.2e-56 223.4 127 81.9
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.5e-56 223.0 127 81.9
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.5e-56 223.0 127 84.3
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.5e-56 223.0 124 84.7
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.0e-56 222.6 125 86.4
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 2.0e-56 222.6 127 85.0
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 2.0e-56 222.6 127 83.5
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.6e-56 222.2 124 85.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 2.6e-56 222.2 124 84.7
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 2.6e-56 222.2 127 84.3
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 3.4e-56 221.9 124 83.9
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.4e-56 221.9 124 83.9
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.4e-56 221.9 124 83.9
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 4.5e-56 221.5 124 85.5
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 5.8e-56 221.1 127 83.5
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 5.8e-56 221.1 127 83.5
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 5.8e-56 221.1 127 84.3
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 7.6e-56 220.7 125 84.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 7.6e-56 220.7 134 79.1
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 9.9e-56 220.3 127 81.9
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.9e-56 220.3 127 84.3
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 9.9e-56 220.3 127 81.1
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 9.9e-56 220.3 127 85.0
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.3e-55 219.9 124 83.1
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.7e-55 219.5 118 87.3
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.7e-55 219.5 127 81.1
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.7e-55 219.5 127 81.1
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.2e-55 219.2 127 81.9
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.2e-55 219.2 118 87.3
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.8e-55 218.4 127 81.9
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.8e-55 218.4 127 84.3
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 6.4e-55 217.6 128 82.0
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 6.4e-55 217.6 127 81.1
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 8.4e-55 217.2 124 83.1
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.1e-54 216.9 124 83.1
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.4e-54 216.5 124 83.1
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.4e-54 216.5 128 82.8
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.4e-54 216.5 127 79.5
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.4e-54 215.7 127 82.7
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 2.4e-54 215.7 128 79.7
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.2e-54 214.9 127 80.3
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.2e-54 214.9 127 80.3
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 4.2e-54 214.9 127 80.3
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 5.5e-54 214.5 127 80.3
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 7.1e-54 214.2 127 79.5
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.1e-54 214.2 134 75.4
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 9.3e-54 213.8 128 82.0
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 9.3e-54 213.8 127 80.3
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.2e-53 213.4 127 78.7
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.2e-53 213.4 128 81.2
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.6e-53 213.0 124 81.5
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.7e-53 212.2 127 80.3
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 3.5e-53 211.8 125 80.0
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 4.6e-53 211.5 133 77.4
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 4.6e-53 211.5 120 81.7
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 6.0e-53 211.1 127 79.5
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.3e-52 209.9 128 79.7
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.8e-52 209.5 127 78.7
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 3.0e-52 208.8 127 78.7
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 3.0e-52 208.8 125 80.8
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 3.0e-52 208.8 120 80.8
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.9e-52 208.4 127 78.7
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 3.9e-52 208.4 127 78.7
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 3.9e-52 208.4 127 78.7
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.9e-52 208.4 128 80.5
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 6.7e-52 207.6 128 78.1
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 6.7e-52 207.6 124 78.2
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 6.7e-52 207.6 128 78.9
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 1.1e-51 206.8 127 78.7
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 1.1e-51 206.8 127 78.7
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 1.1e-51 206.8 127 78.7
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.5e-51 206.5 127 78.0
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 2.5e-51 205.7 127 78.0
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 2.5e-51 205.7 127 78.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 4.3e-51 204.9 127 78.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 4.3e-51 204.9 126 75.4
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 2.1e-50 202.6 127 76.4
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.8e-50 202.2 120 78.3
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 4.8e-50 201.4 128 77.3
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.8e-49 199.5 127 78.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.0e-48 196.1 125 73.6
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.1e-46 190.3 127 75.6
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.1e-45 186.0 109 78.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 6.0e-45 184.5 171 58.5
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.1e-43 180.3 106 82.1
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 1.5e-43 179.9 128 73.4
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 8.2e-42 174.1 115 73.0
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 7.9e-37 157.5 87 88.5
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 3.0e-36 155.6 106 74.5
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.3e-35 152.1 84 81.0
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.7e-34 148.7 82 85.4
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 7.2e-30 134.4 74 90.5
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 7.4e-27 124.4 76 77.6
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.4e-25 120.2 127 55.1
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.4e-25 120.2 98 59.2
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 6.9e-25 117.9 88 63.6
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 2.0e-24 116.3 89 64.0
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.0e-23 111.7 61 88.5
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.2e-22 109.0 67 77.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.6e-21 105.5 67 77.6
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.7e-21 105.1 57 89.5
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 4.4e-19 98.6 83 53.0
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 7.7e-16 87.8 51 84.3
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 3.2e-14 82.4 114 46.5
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 5.5e-14 81.6 81 51.9
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.1e-09 67.4 38 78.9
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 2.0e-08 63.2 59 45.8
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.0e-08 63.2 40 67.5
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.2e-06 55.8 50 64.0


User provided reference genes

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