Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p009017 Quercus lobata HOM05D004225 ORTHO05D004728 2.8e-123 445.3 220 100.0
QL07p018789 Quercus lobata HOM05D004225 ORTHO05D004728 1.0e-56 224.2 118 94.1
Prupe.7G007400 Prunus persica HOM05D004225 ORTHO05D004728 5.7e-52 208.4 143 73.4
Duzib177G1146 Durio zibethinus HOM05D004225 ORTHO05D004728 2.8e-51 206.1 128 79.7
Lj2A418T70 Lonicera japonica HOM05D004225 ORTHO05D004728 6.3e-51 204.9 118 82.2
MD12G1006900 Malus domestica HOM05D004225 ORTHO05D004728 1.1e-50 204.1 118 83.9
Sabra13G0049600 Salix brachista HOM05D004225 ORTHO05D004728 1.4e-50 203.8 118 83.1
TWI60G0668 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 1.4e-50 203.8 117 83.8
RcHm_v2.0_Chr3g0496671 Rosa chinensis HOM05D004225 ORTHO05D004728 1.8e-50 203.4 118 82.2
CsaV3_2G035890 Cucumis sativus L. HOM05D004225 ORTHO05D004728 3.1e-50 202.6 128 77.3
FvH4_1g28360 Fragaria vesca HOM05D004225 ORTHO05D004728 3.1e-50 202.6 118 82.2
FAN19G2926 Fragaria x ananassa HOM05D000495 ORTHO05D004728 3.1e-50 202.6 118 82.2
Cpa.g.sc161.2 Carica papaya HOM05D004225 ORTHO05D004728 4.1e-50 202.2 143 71.3
MELO3C024751.2 Cucumis melo HOM05D004225 ORTHO05D004728 4.1e-50 202.2 128 77.3
Dinv11924 Davidia involucrata HOM05D004225 ORTHO05D004728 4.1e-50 202.2 113 84.1
Dinv25097 Davidia involucrata HOM05D004225 ORTHO05D004728 7.0e-50 201.4 113 85.0
FAN26G1663 Fragaria x ananassa HOM05D004225 ORTHO05D004728 9.1e-50 201.1 118 82.2
Gohir.A11G233000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 9.1e-50 201.1 137 74.5
Cfa017675 Carpinus fangiana HOM05D004225 ORTHO05D004728 1.2e-49 200.7 118 82.2
PSO339G3394 Papaver somniferum HOM05D004225 ORTHO05D004728 1.2e-49 200.7 148 68.2
Thecc.05G246800 Theobroma cacao HOM05D004225 ORTHO05D004728 1.2e-49 200.7 129 78.3
CiPaw.10G126100 Carya illinoinensis HOM05D004225 ORTHO05D004728 2.0e-49 199.9 118 81.4
Duzib128G0769 Durio zibethinus HOM05D004225 ORTHO05D004728 2.0e-49 199.9 128 77.3
Eucgr.A02119 Eucalyptus grandis HOM05D004225 ORTHO05D004728 2.0e-49 199.9 118 79.7
MD14G1004600 Malus domestica HOM05D004225 ORTHO05D004728 2.6e-49 199.5 118 82.2
Potri.013G055300 Populus trichocarpa HOM05D004225 ORTHO05D004728 2.6e-49 199.5 118 80.5
TWI32G0579 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 2.6e-49 199.5 118 82.2
Atru.chr2.1407 Acer truncatum HOM05D004225 ORTHO05D004728 1.0e-48 197.6 118 80.5
Gohir.D11G244200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.3e-48 197.2 137 73.7
Gorai.007G259700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.7e-48 196.8 137 73.7
Manes.09G139100 Manihot esculenta HOM05D004225 ORTHO05D004728 2.2e-48 196.4 117 80.3
MSTRG.5924 Avicennia marina HOM05D004225 ORTHO05D004728 2.9e-48 196.1 118 77.1
Lsat_1_v5_gn_2_103941 Lactuca sativa HOM05D004225 ORTHO05D004728 2.9e-48 196.1 119 79.8
MBI11_g07706_MAGBIO Magnolia biondii HOM05D004225 ORTHO05D004728 2.9e-48 196.1 118 80.5
Rhsim03G0054800 Rhododendron simsii HOM05D004225 ORTHO05D004728 2.9e-48 196.1 142 68.3
SalBow3G0054 Salvia bowleyana HOM05D004225 ORTHO05D004728 5.0e-48 195.3 118 77.1
GSVIVG01022462001 Vitis vinifera HOM05D004225 ORTHO05D004728 5.0e-48 195.3 131 75.6
CANSAT78G2348 Cannabis sativa HOM05D004225 ORTHO05D004728 6.5e-48 194.9 117 78.6
Sed0003216 Sechium edule HOM05D004225 ORTHO05D004728 6.5e-48 194.9 105 86.7
vmacro07548 Vaccinium macrocarpon HOM05D004225 ORTHO05D004728 6.5e-48 194.9 118 79.7
CSS0005542 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 1.1e-47 194.1 118 79.7
CSS0022490 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 1.1e-47 194.1 118 79.7
Cc06_g07240 Coffea canephora HOM05D004225 ORTHO05D004728 1.9e-47 193.4 118 78.0
COL.COLO4_32974 Corchorus olitorius HOM05D004225 ORTHO05D004728 1.9e-47 193.4 142 71.1
FAN23G2269 Fragaria x ananassa HOM05D004225 ORTHO05D004728 1.9e-47 193.4 131 74.0
Migut.J00760 Erythranthe guttata HOM05D004225 ORTHO05D004728 2.5e-47 193.0 118 78.0
HanXRQChr14g0453121 Helianthus annuus HOM05D004225 ORTHO05D004728 2.5e-47 193.0 119 77.3
Aa31LG5G14340 Aethionema arabicum HOM05D004225 ORTHO05D004728 4.2e-47 192.2 119 76.5
Aqoxy1G00553 Aquilegia oxysepala HOM05D004225 ORTHO05D004728 4.2e-47 192.2 144 66.7
THA.LOC104820785 Tarenaya hassleriana HOM05D004225 ORTHO05D004728 4.2e-47 192.2 129 72.9
ClCG02G007850 Citrullus lanatus HOM05D004225 ORTHO05D004728 5.5e-47 191.8 145 68.3
Peaxi162Scf00061g00247 Petunia axillaris HOM05D004225 ORTHO05D004728 5.5e-47 191.8 117 76.9
TPR.G31024 Trifolium pratense HOM05D004225 ORTHO05D004728 5.5e-47 191.8 118 78.0
AL3G13620 Arabidopsis lyrata HOM05D004225 ORTHO05D004728 7.2e-47 191.4 119 76.5
CARHR077860 Cardamine hirsuta HOM05D004225 ORTHO05D004728 7.2e-47 191.4 118 77.1
Gohir.A13G165100 Gossypium hirsutum HOM05D004225 ORTHO05D004728 7.2e-47 191.4 129 73.6
Hund10817 Selenicereus undatus HOM05D004225 ORTHO05D004728 7.2e-47 191.4 118 74.6
SGA_v2.0_scaffold112G31648 Striga asiatica HOM05D004225 ORTHO05D004728 9.4e-47 191.0 118 74.6
HPP92_028052 Vanilla planifolia HOM05D004225 ORTHO05D004728 9.4e-47 191.0 145 64.1
Psat3g087720 Pisum sativum HOM05D004225 ORTHO05D004728 1.2e-46 190.7 118 78.8
Psat3g087760 Pisum sativum HOM05D004225 ORTHO05D004728 1.2e-46 190.7 118 78.8
Sc01g0005150 Simmondsia chinensis HOM05D004225 ORTHO05D004728 1.2e-46 190.7 111 81.1
Thhalv10019953m.g Eutrema salsugineum HOM05D004225 ORTHO05D004728 1.6e-46 190.3 119 75.6
Nitab4.5_0010528g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 1.6e-46 190.3 117 78.6
Oeu029554.1 Olea europaea HOM05D004225 ORTHO05D004728 2.1e-46 189.9 106 81.1
Haze_20474 Corylus avellana HOM05D004225 ORTHO05D004728 2.7e-46 189.5 135 71.1
AT3G03790 Arabidopsis thaliana HOM05D004225 ORTHO05D004728 4.7e-46 188.7 119 74.8
Lalb_Chr14g0364611 Lupinus albus HOM05D004225 ORTHO05D004728 4.7e-46 188.7 144 64.6
Nitab4.5_0001355g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 4.7e-46 188.7 117 77.8
Sp3g02770 Schrenkiella parvula HOM05D004225 ORTHO05D004728 4.7e-46 188.7 119 74.8
ATR0697G085 Amborella trichopoda HOM05D004225 ORTHO05D004728 8.0e-46 188.0 118 76.3
DCAR_020662 Daucus carota HOM05D004225 ORTHO05D004728 8.0e-46 188.0 111 80.2
Sopen01g020500 Solanum pennellii HOM05D004225 ORTHO05D004728 1.0e-45 187.6 117 76.9
CDE10G0988 Ceratophyllum demersum HOM05D004225 ORTHO05D004728 1.4e-45 187.2 110 78.2
Glyma.19G113700 Glycine max HOM05D004225 ORTHO05D004728 1.4e-45 187.2 118 78.0
Phvul.001G113200 Phaseolus vulgaris HOM05D004225 ORTHO05D004728 1.8e-45 186.8 118 77.1
Solyc01g056570.3 Solanum lycopersicum HOM05D004225 ORTHO05D004728 1.8e-45 186.8 117 76.9
Ca_08286_v3 Cicer arietinum L. HOM05D004225 ORTHO05D004728 2.3e-45 186.4 107 81.3
VMungo1383G3152 Vigna mungo HOM05D004225 ORTHO05D004728 2.3e-45 186.4 118 76.3
arahy.Tifrunner.gnm1.ann1.4I2AVL Arachis hypogaea HOM05D004225 ORTHO05D004728 4.0e-45 185.7 118 73.7
arahy.Tifrunner.gnm1.ann1.MX8T8B Arachis hypogaea HOM05D004225 ORTHO05D004728 4.0e-45 185.7 118 73.7
Medtr7g086050 Medicago truncatula HOM05D004225 ORTHO05D004728 5.2e-45 185.3 107 79.4
ECA238G0084 Erigeron canadensis HOM05D004225 ORTHO05D004728 6.7e-45 184.9 117 76.1
EL10Ac5g11767 Beta vulgaris HOM05D004225 ORTHO05D004728 8.8e-45 184.5 129 69.0
A05p43600 Brassica napus HOM05D004225 ORTHO05D004728 1.2e-44 184.1 119 73.1
BcaC05g29906 Brassica carinata HOM05D004225 ORTHO05D004728 1.5e-44 183.7 119 72.3
BraA05t23099Z Brassica rapa HOM05D004225 ORTHO05D004728 1.5e-44 183.7 119 72.3
AUR62039726 Chenopodium quinoa HOM05D004225 ORTHO05D004728 1.5e-44 183.7 107 77.6
Gohir.D13G168000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.0e-44 183.3 122 72.1
Carub.0003s0296 Capsella rubella HOM05D004225 ORTHO05D004728 2.6e-44 183.0 119 72.3
BolC5t34981H Brassica oleracea HOM05D004225 ORTHO05D004728 3.3e-44 182.6 119 72.3
Lj1g0011347 Lotus japonicus HOM05D004225 ORTHO05D004728 3.3e-44 182.6 118 74.6
Gorai.013G194200 Gossypium raimondii HOM05D004225 ORTHO05D004728 4.4e-44 182.2 122 71.3
C05p63190 Brassica napus HOM05D004225 ORTHO05D004728 5.7e-44 181.8 119 71.4
AUR62036278 Chenopodium quinoa HOM05D004225 ORTHO05D004728 1.7e-43 180.3 107 76.6
BcaC05g30250 Brassica carinata HOM05D004225 ORTHO05D004728 2.8e-43 179.5 119 71.4
BcaC05g30283 Brassica carinata HOM05D004225 ORTHO05D004728 2.8e-43 179.5 119 71.4
Glyma.16G038900 Glycine max HOM05D004225 ORTHO05D004728 2.8e-43 179.5 118 74.6
Os07g0165200 Oryza sativa ssp. japonica HOM05D004225 ORTHO05D004728 2.8e-43 179.5 118 71.2
Ah.12g059700 Amaranthus hybridus HOM05D004225 ORTHO05D004728 4.8e-43 178.7 118 73.7
unitig_27.g24735 Utricularia gibba HOM05D004225 ORTHO05D004728 6.3e-43 178.3 111 73.9
CAN.G170.116 Capsicum annuum HOM05D004225 ORTHO05D004728 3.1e-42 176.0 117 73.5
Zm00001eb300770 Zea mays HOM05D004225 ORTHO05D004728 1.6e-41 173.7 118 67.8
SEGI_41481 Sequoiadendron giganteum HOM05D004225 ORTHO05D004728 3.5e-41 172.6 104 77.9
Actinidia03947 Actinidia chinensis HOM05D004225 ORTHO05D004728 5.9e-41 171.8 118 72.0
Pp3c8_24330 Physcomitrium patens HOM05D004225 ORTHO05D004728 7.7e-41 171.4 115 65.2
SHI13905 Sapria himalayana HOM05D004225 ORTHO05D004728 2.2e-40 169.9 109 70.6
Mapoly0082s0025 Marchantia polymorpha HOM05D004225 ORTHO05D004728 6.1e-38 161.8 107 69.2
Zm00001eb188870 Zea mays HOM05D004225 ORTHO05D004728 6.1e-38 161.8 109 67.9
Zm00001eb190210 Zea mays HOM05D004225 ORTHO05D004728 8.0e-38 161.4 108 68.5
AagrBONN_evm.TU.Sc2ySwM_228.1834 Anthoceros agrestis HOM05D004225 ORTHO05D004728 1.2e-36 157.5 119 62.2
SMO367G1027 Selaginella moellendorffii HOM05D004225 ORTHO05D004728 3.4e-36 156.0 105 66.7
CBR_g37355 Chara braunii HOM05D004225 ORTHO05D004728 3.7e-35 152.5 121 62.8
PSO384G1703 Papaver somniferum HOM05D004225 ORTHO05D004728 6.3e-35 151.8 148 54.1
TPR.G1885 Trifolium pratense HOM05D004225 ORTHO05D004728 1.6e-33 147.1 132 61.4
Zm00001eb072590 Zea mays HOM05D001185 ORTHO05D004728 1.3e-32 144.1 81 76.5
Mapoly0007s0178 Marchantia polymorpha HOM05D004225 ORTHO05D004728 8.5e-32 141.4 118 60.2
Ciclev10018636m.g Citrus clementina HOM05D004225 ORTHO05D004728 1.8e-29 133.7 148 54.1
TAR633G1831 Trochodendron aralioides HOM05D004225 ORTHO05D004728 1.2e-28 131.0 82 78.0
Actinidia37791 Actinidia chinensis HOM05D004225 ORTHO05D004728 3.4e-28 129.4 119 63.0
Nn1g08427 Nelumbo nucifera HOM05D004225 ORTHO05D004728 8.6e-24 114.8 59 84.7
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 2.3e-13 80.1 42 92.9
SEGI_36942 Sequoiadendron giganteum HOM05D004225 ORTHO05D000239 2.4e-10 70.1 51 66.7
Cre02.g089274 Chlamydomonas reinhardtii HOM05D004225 ORTHO05D004728 3.5e-09 66.2 53 54.7
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 6.6e-08 62.0 47 70.2
DCAR_003202 Daucus carota HOM05D007460 ORTHO05D009396 4.3e-07 59.3 96 35.4
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-06 57.4 45 60.0
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.1e-06 57.0 43 65.1
ATR0037G017 Amborella trichopoda HOM05D007472 ORTHO05D009477 2.8e-06 56.6 95 33.7
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 2.8e-06 56.6 93 37.6
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.8e-06 56.6 101 35.6
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 2.8e-06 56.6 93 37.6
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 2.8e-06 56.6 93 33.3
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 3.6e-06 56.2 42 71.4
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.6e-06 56.2 45 57.8
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 4.7e-06 55.8 98 36.7
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 8.1e-06 55.1 98 34.7
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 8.1e-06 55.1 98 34.7
Oeu019189.1 Olea europaea HOM05D007460 ORTHO05D009396 8.1e-06 55.1 97 33.0
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 8.1e-06 55.1 99 34.3


User provided reference genes

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