Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 1.5e-59 232.6 118 100.0
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 8.4e-26 120.6 72 90.3
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 1.3e-23 113.2 72 83.3
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.4e-20 102.4 62 82.3
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 3.1e-20 102.1 81 72.8
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 6.9e-20 100.9 62 80.6
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 9.0e-20 100.5 65 78.5
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 9.0e-20 100.5 90 60.0
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.5e-19 99.8 83 68.7
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 4.5e-19 98.2 62 77.4
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 5.8e-19 97.8 62 74.2
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 7.6e-19 97.4 62 77.4
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 9.9e-19 97.1 62 75.8
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 1.7e-18 96.3 90 56.7
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.2e-18 95.9 62 74.2
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 2.2e-18 95.9 62 74.2
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 6.4e-18 94.4 62 72.6
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 6.4e-18 94.4 99 58.6
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.4e-17 93.2 62 72.6
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 1.4e-17 93.2 62 71.0
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 1.4e-17 93.2 69 63.8
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 1.4e-17 93.2 62 72.6
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 1.4e-17 93.2 67 68.7
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.9e-17 92.8 62 71.0
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.9e-17 92.8 62 71.0
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 1.9e-17 92.8 62 72.6
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 1.9e-17 92.8 62 72.6
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 1.9e-17 92.8 62 72.6
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 2.4e-17 92.4 61 77.0
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 2.4e-17 92.4 90 55.6
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 3.2e-17 92.0 62 71.0
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 3.2e-17 92.0 62 75.8
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 3.2e-17 92.0 72 65.3
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 5.4e-17 91.3 71 67.6
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 7.1e-17 90.9 62 72.6
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 7.1e-17 90.9 62 71.0
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 9.3e-17 90.5 62 67.7
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 2.7e-16 89.0 62 66.1
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 3.5e-16 88.6 62 71.0
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.6e-16 88.2 62 69.4
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.6e-16 88.2 62 69.4
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 6.0e-16 87.8 62 69.4
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.3e-15 86.7 90 52.2
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 1.8e-15 86.3 62 64.5
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 1.8e-15 86.3 62 67.7
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 2.3e-15 85.9 61 68.9
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 3.0e-15 85.5 72 62.5
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 3.0e-15 85.5 72 62.5
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 5.1e-15 84.7 79 58.2
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 5.1e-15 84.7 79 58.2
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 6.7e-15 84.3 62 66.1
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 6.7e-15 84.3 61 65.6
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.9e-14 82.8 79 58.2
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 4.3e-14 81.6 71 59.2
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 5.6e-14 81.3 71 63.4
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 7.4e-14 80.9 62 66.1
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 7.4e-14 80.9 72 59.7
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 2.1e-13 79.3 71 62.0
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 2.1e-13 79.3 71 60.6
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 2.8e-13 79.0 71 59.2
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 2.8e-13 79.0 62 61.3
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 4.8e-13 78.2 61 62.3
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 1.1e-12 77.0 71 60.6
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 1.4e-12 76.6 79 53.2
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 1.4e-12 76.6 62 61.3
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 1.8e-12 76.3 62 54.8
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 2.4e-12 75.9 62 56.5
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 2.4e-12 75.9 75 56.0
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 3.1e-12 75.5 71 59.2
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 3.1e-12 75.5 71 59.2
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 4.0e-12 75.1 75 54.7
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 5.3e-12 74.7 62 53.2
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 5.3e-12 74.7 62 53.2
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 6.9e-12 74.3 62 61.3
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 6.9e-12 74.3 71 56.3
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 1.2e-11 73.6 62 53.2
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 1.2e-11 73.6 62 51.6
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 1.5e-11 73.2 62 51.6
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 1.5e-11 73.2 62 51.6
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.5e-11 73.2 61 57.4
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 1.5e-11 73.2 75 52.0
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 3.4e-11 72.0 62 51.6
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 3.4e-11 72.0 62 50.0
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 3.4e-11 72.0 62 50.0
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 3.4e-11 72.0 61 55.7
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 7.6e-11 70.9 62 51.6
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 7.6e-11 70.9 62 51.6
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 7.6e-11 70.9 62 51.6
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 7.6e-11 70.9 62 51.6
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 9.9e-11 70.5 62 48.4
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 9.9e-11 70.5 62 48.4
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 9.9e-11 70.5 62 48.4
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 2.9e-10 68.9 62 58.1
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 6.4e-10 67.8 60 61.7
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 8.4e-10 67.4 67 50.7
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 8.4e-10 67.4 60 61.7
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.4e-09 66.6 90 46.7
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 6.0e-08 61.2 75 48.0
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 1.0e-07 60.5 61 55.7
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-07 60.1 62 53.2
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-07 60.1 72 50.0
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.9e-07 58.5 72 48.6
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 9.6e-06 53.9 39 53.8


User provided reference genes

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