Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.0e-110 404.1 326 100.0
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 8.4e-68 261.5 221 75.1
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 3.9e-65 252.7 195 77.4
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.9e-64 250.4 210 72.9
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 7.4e-64 248.4 217 71.9
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 1.3e-63 247.7 204 75.5
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 4.5e-61 239.2 190 81.6
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 4.5e-61 239.2 208 71.2
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 7.6e-61 238.4 152 82.9
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.9e-60 236.5 224 65.2
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 6.4e-60 235.3 211 71.6
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 8.4e-60 235.0 215 70.7
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 8.4e-60 235.0 139 83.5
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 7.1e-59 231.9 138 84.8
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 7.1e-59 231.9 150 82.0
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 1.2e-58 231.1 132 84.8
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 6.0e-58 228.8 151 78.1
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-57 227.6 224 63.8
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 2.3e-57 226.9 150 79.3
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 3.0e-57 226.5 139 82.7
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 3.0e-57 226.5 139 82.7
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 3.9e-57 226.1 149 78.5
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 5.1e-57 225.7 150 80.0
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 8.7e-57 224.9 209 70.8
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 8.7e-57 224.9 140 83.6
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 1.1e-56 224.6 212 68.9
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 1.5e-56 224.2 139 81.3
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.5e-56 224.2 209 70.8
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 3.3e-56 223.0 152 76.3
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 7.4e-56 221.9 146 78.1
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 2.8e-55 219.9 146 77.4
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 2.8e-55 219.9 139 80.6
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 3.7e-55 219.5 141 78.0
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 6.2e-55 218.8 150 74.0
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 8.2e-55 218.4 211 67.3
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 8.2e-55 218.4 136 82.4
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 1.1e-54 218.0 213 67.6
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 1.8e-54 217.2 224 58.0
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 2.4e-54 216.9 143 80.4
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 2.4e-54 216.9 151 72.2
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 2.4e-54 216.9 224 61.2
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.0e-54 216.1 137 78.8
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 4.0e-54 216.1 189 73.5
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 5.3e-54 215.7 150 72.0
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 6.9e-54 215.3 217 64.5
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 6.9e-54 215.3 140 78.6
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 9.0e-54 214.9 140 78.6
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 9.0e-54 214.9 155 74.2
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 1.5e-53 214.2 225 58.2
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.5e-53 214.2 143 76.2
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 3.4e-53 213.0 141 76.6
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 3.4e-53 213.0 141 78.7
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 3.4e-53 213.0 141 78.7
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 5.8e-53 212.2 140 77.1
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 5.8e-53 212.2 329 71.1
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 7.6e-53 211.8 215 66.0
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 1.3e-52 211.1 140 77.9
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 1.3e-52 211.1 139 77.7
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 1.3e-52 211.1 139 77.0
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 1.7e-52 210.7 139 77.7
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.7e-52 210.7 133 78.9
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 2.2e-52 210.3 146 74.0
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 2.9e-52 209.9 141 75.9
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 2.9e-52 209.9 139 77.0
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 3.8e-52 209.5 141 77.3
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 4.9e-52 209.1 142 76.1
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 6.5e-52 208.8 206 57.8
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 8.4e-52 208.4 136 77.9
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.1e-51 208.0 145 73.8
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 1.9e-51 207.2 208 67.3
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.5e-51 206.8 228 64.5
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 2.5e-51 206.8 151 74.2
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 3.2e-51 206.5 196 67.3
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 4.2e-51 206.1 139 75.5
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 4.2e-51 206.1 143 76.9
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 7.1e-51 205.3 213 62.4
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 9.3e-51 204.9 139 74.8
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 1.2e-50 204.5 135 75.6
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 1.2e-50 204.5 200 65.5
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.6e-50 204.1 152 71.7
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 3.5e-50 203.0 152 70.4
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 3.5e-50 203.0 193 65.8
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 4.6e-50 202.6 135 74.8
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 6.0e-50 202.2 224 59.8
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 1.0e-49 201.4 135 73.3
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 1.0e-49 201.4 195 65.6
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 1.0e-49 201.4 135 73.3
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 1.8e-49 200.7 135 74.1
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 2.3e-49 200.3 135 72.6
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.0e-49 199.9 140 72.9
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 3.0e-49 199.9 223 60.5
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 3.0e-49 199.9 139 73.4
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.9e-48 197.2 153 68.6
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.9e-48 197.2 223 62.8
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.3e-48 196.4 153 70.6
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 7.4e-48 195.3 133 73.7
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 9.7e-48 194.9 224 54.5
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 9.7e-48 194.9 224 59.8
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 9.7e-48 194.9 224 59.8
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 1.6e-47 194.1 152 69.7
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 3.7e-47 193.0 152 67.1
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 3.7e-47 193.0 150 67.3
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 1.1e-46 191.4 139 71.2
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 1.1e-46 191.4 192 63.0
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 2.4e-46 190.3 135 70.4
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 2.4e-46 190.3 191 64.4
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 3.1e-46 189.9 135 70.4
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 3.1e-46 189.9 135 70.4
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 3.1e-46 189.9 135 70.4
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 3.1e-46 189.9 136 71.3
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 4.1e-46 189.5 191 64.4
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 6.9e-46 188.7 132 73.5
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 9.0e-46 188.3 135 69.6
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 2.0e-45 187.2 192 61.5
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 2.6e-45 186.8 133 74.4
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 4.5e-45 186.0 157 66.2
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 2.2e-44 183.7 211 60.7
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 1.4e-43 181.0 135 71.9
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 4.2e-43 179.5 143 67.8
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 2.1e-42 177.2 213 54.5
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 2.7e-42 176.8 195 55.4
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 2.7e-42 176.8 200 56.0
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 2.3e-41 173.7 126 68.3
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 2.3e-41 173.7 142 64.1
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 2.3e-41 173.7 142 64.1
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 3.9e-41 172.9 130 69.2
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 3.9e-41 172.9 130 69.2
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 3.9e-41 172.9 130 69.2
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 3.9e-41 172.9 100 86.0
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 3.9e-41 172.9 230 54.8
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 8.8e-41 171.8 154 63.0
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 2.2e-39 167.2 121 69.4
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 8.2e-39 165.2 140 65.0
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 8.2e-39 165.2 157 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 1.1e-38 164.9 114 71.1
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 9.1e-38 161.8 131 65.6
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 4.5e-37 159.5 153 58.8
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 6.1e-34 149.1 157 57.3
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 7.9e-34 148.7 123 65.0
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 9.7e-32 141.7 97 75.3
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 7.0e-30 135.6 98 71.4
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 2.6e-29 133.7 137 58.4
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.6e-29 133.7 155 52.9
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 2.5e-27 127.1 90 73.3
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 6.1e-26 122.5 92 68.5
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 8.0e-26 122.1 116 55.2
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 8.8e-25 118.6 139 51.8
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 7.4e-24 115.5 180 52.8
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 4.8e-23 112.8 73 76.7
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.7e-20 104.4 193 49.2
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 4.2e-19 99.8 80 65.0
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 1.0e-17 95.1 49 89.8
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 1.0e-17 95.1 49 89.8
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 8.8e-17 92.0 108 50.9
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 9.1e-14 82.0 45 86.7
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 2.0e-08 64.3 40 75.0
Cre09.g389652 Chlamydomonas reinhardtii HOM05D004676 ORTHO05D005661 5.7e-08 62.8 124 37.1


User provided reference genes

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