Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p008086 Quercus lobata HOM05D000141 ORTHO05D338167 2.3e-127 458.8 212 100.0
QL09p008268 Quercus lobata HOM05D000141 ORTHO05D337739 1.1e-31 141.0 162 49.4
TAR629G2130 Trochodendron aralioides HOM05D000141 ORTHO05D001968 2.1e-11 73.6 88 44.3
AUR62012585 Chenopodium quinoa HOM05D000141 ORTHO05D001968 2.8e-11 73.2 104 40.4
Oeu007616.1 Olea europaea HOM05D000141 ORTHO05D001968 6.1e-11 72.0 88 42.0
Hund23534 Selenicereus undatus HOM05D000141 ORTHO05D001968 6.1e-11 72.0 88 44.3
Nn1g03714 Nelumbo nucifera HOM05D000141 ORTHO05D001968 1.4e-10 70.9 86 44.2
AUR62014616 Chenopodium quinoa HOM05D000141 ORTHO05D001968 1.8e-10 70.5 88 42.0
EL10Ac8g19916 Beta vulgaris HOM05D000141 ORTHO05D001968 2.3e-10 70.1 88 40.9
Carub.0007s2016 Capsella rubella HOM05D000141 ORTHO05D001968 3.0e-10 69.7 104 36.5
Hund21318 Selenicereus undatus HOM05D000141 ORTHO05D001968 3.0e-10 69.7 88 42.0
AT4G21270 Arabidopsis thaliana HOM05D000141 ORTHO05D001968 4.0e-10 69.3 99 37.4
Glyma.07G186700 Glycine max HOM05D000141 ORTHO05D001968 5.2e-10 68.9 87 40.2
Lalb_Chr22g0357111 Lupinus albus HOM05D000141 ORTHO05D001968 5.2e-10 68.9 88 43.2
THA.LOC104799885 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 5.2e-10 68.9 88 39.8
AL7G32840 Arabidopsis lyrata HOM05D000141 ORTHO05D001968 6.8e-10 68.6 99 37.4
CiPaw.10G066600 Carya illinoinensis HOM05D000141 ORTHO05D001968 6.8e-10 68.6 88 42.0
Ah.14g088470 Amaranthus hybridus HOM05D000141 ORTHO05D001968 8.9e-10 68.2 88 40.9
CARHR227850 Cardamine hirsuta HOM05D000141 ORTHO05D001968 8.9e-10 68.2 99 36.4
MELO3C002509.2 Cucumis melo HOM05D000141 ORTHO05D001968 8.9e-10 68.2 86 41.9
CsaV3_1G011320 Cucumis sativus L. HOM05D000141 ORTHO05D001968 8.9e-10 68.2 86 41.9
Manes.16G017100 Manihot esculenta HOM05D000141 ORTHO05D001968 8.9e-10 68.2 88 40.9
Aa31LG9G9250 Aethionema arabicum HOM05D000141 ORTHO05D001968 1.2e-09 67.8 99 38.4
Cpa.g.sc81.9 Carica papaya HOM05D000141 ORTHO05D001968 1.2e-09 67.8 88 39.8
PSO210G7308 Papaver somniferum HOM05D000141 ORTHO05D001968 1.2e-09 67.8 88 42.0
Sp7g19350 Schrenkiella parvula HOM05D000141 ORTHO05D001968 1.2e-09 67.8 99 37.4
VMungo0331G1767 Vigna mungo HOM05D000141 ORTHO05D001968 1.2e-09 67.8 85 40.0
CSS0038905 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 1.5e-09 67.4 88 40.9
CSS0042879 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 1.5e-09 67.4 88 40.9
CAN.G337.155 Capsicum annuum HOM05D000141 ORTHO05D001968 1.5e-09 67.4 88 40.9
ClCG03G005120 Citrullus lanatus HOM05D000141 ORTHO05D001968 1.5e-09 67.4 86 41.9
Hma1.2p1_1682F.1_g297330 Hydrangea macrophylla HOM05D000141 ORTHO05D001968 1.5e-09 67.4 88 40.9
arahy.Tifrunner.gnm1.ann1.R4UZW9 Arachis hypogaea HOM05D000141 ORTHO05D001968 2.0e-09 67.0 87 41.4
Glyma.08G062500 Glycine max HOM05D000141 ORTHO05D001968 2.0e-09 67.0 103 35.9
Glyma.13G251100 Glycine max HOM05D000141 ORTHO05D001968 2.0e-09 67.0 87 41.4
Glyma.15G063200 Glycine max HOM05D000141 ORTHO05D001968 2.0e-09 67.0 87 41.4
PSO832G1105 Papaver somniferum HOM05D000141 ORTHO05D001968 2.0e-09 67.0 88 42.0
Ca_18447_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001968 2.6e-09 66.6 88 42.0
Lalb_Chr20g0122651 Lupinus albus HOM05D000141 ORTHO05D001968 2.6e-09 66.6 87 41.4
Nn1g06957 Nelumbo nucifera HOM05D000141 ORTHO05D001968 2.6e-09 66.6 86 40.7
Phvul.006G196400 Phaseolus vulgaris HOM05D000141 ORTHO05D001968 2.6e-09 66.6 87 41.4
QL05p077145 Quercus lobata HOM05D000141 ORTHO05D001968 2.6e-09 66.6 88 42.0
QL08p013485 Quercus lobata HOM05D000141 ORTHO05D001968 2.6e-09 66.6 104 37.5
QL08p013805 Quercus lobata HOM05D000141 ORTHO05D001968 2.6e-09 66.6 104 37.5
QL93p0073_1235 Quercus lobata HOM05D000141 ORTHO05D001968 2.6e-09 66.6 88 42.0
THA.LOC104806262 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 2.6e-09 66.6 98 36.7
VMungo0251G0648 Vigna mungo HOM05D000141 ORTHO05D001968 2.6e-09 66.6 85 40.0
arahy.Tifrunner.gnm1.ann1.KY6G5X Arachis hypogaea HOM05D000141 ORTHO05D001968 3.4e-09 66.2 87 41.4
CANSAT11G0716 Cannabis sativa HOM05D000141 ORTHO05D001968 3.4e-09 66.2 103 37.9
Haze_09592 Corylus avellana HOM05D000141 ORTHO05D001968 3.4e-09 66.2 104 38.5
Ah.09g237160 Amaranthus hybridus HOM05D000141 ORTHO05D001968 4.4e-09 65.9 88 38.6
Carub.0006s3314 Capsella rubella HOM05D000141 ORTHO05D001968 4.4e-09 65.9 103 36.9
CARHR252360 Cardamine hirsuta HOM05D000141 ORTHO05D001968 4.4e-09 65.9 104 36.5
COL.COLO4_31687 Corchorus olitorius HOM05D000141 ORTHO05D001968 4.4e-09 65.9 95 37.9
Duzib192G0544 Durio zibethinus HOM05D000141 ORTHO05D001968 4.4e-09 65.9 87 41.4
Lalb_Chr16g0383241 Lupinus albus HOM05D000141 ORTHO05D001968 4.4e-09 65.9 87 41.4
THA.LOC104812529 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 4.4e-09 65.9 99 36.4
arahy.Tifrunner.gnm1.ann1.YUGY0X Arachis hypogaea HOM05D000141 ORTHO05D001968 5.7e-09 65.5 105 35.2
CiPaw.09G080400 Carya illinoinensis HOM05D000141 ORTHO05D001968 5.7e-09 65.5 88 40.9
FvH4_3g02912 Fragaria vesca HOM05D000141 ORTHO05D001968 5.7e-09 65.5 86 40.7
Prupe.4G201200 Prunus persica HOM05D000141 ORTHO05D001968 5.7e-09 65.5 104 37.5
Solyc07g064030.4 Solanum lycopersicum HOM05D000141 ORTHO05D001968 5.7e-09 65.5 88 39.8
Sopen07g032170 Solanum pennellii HOM05D000141 ORTHO05D001968 5.7e-09 65.5 88 39.8
PGSC0003DMG400019264 Solanum tuberosum HOM05D000141 ORTHO05D001968 5.7e-09 65.5 88 39.8
vmacro15840 Vaccinium macrocarpon HOM05D000141 ORTHO05D001968 5.7e-09 65.5 87 40.2
arahy.Tifrunner.gnm1.ann1.QWU62Y Arachis hypogaea HOM05D000141 ORTHO05D001968 7.5e-09 65.1 105 35.2
FAN25G0440 Fragaria x ananassa HOM05D000141 ORTHO05D001968 7.5e-09 65.1 86 40.7
Lj3g0020976 Lotus japonicus HOM05D000141 ORTHO05D001968 7.5e-09 65.1 88 38.6
Lalb_Chr01g0006161 Lupinus albus HOM05D000141 ORTHO05D001968 7.5e-09 65.1 88 38.6
Lalb_Chr18g0060111 Lupinus albus HOM05D000141 ORTHO05D001968 7.5e-09 65.1 87 40.2
Oeu013858.2 Olea europaea HOM05D000141 ORTHO05D001968 7.5e-09 65.1 88 40.9
Aqoxy1G03803 Aquilegia oxysepala HOM05D000141 ORTHO05D001968 9.8e-09 64.7 88 39.8
CANSAT56G1430 Cannabis sativa HOM05D000141 ORTHO05D001968 9.8e-09 64.7 88 40.9
Cfa020436 Carpinus fangiana HOM05D000141 ORTHO05D001968 9.8e-09 64.7 104 37.5
Duzib235G0067 Durio zibethinus HOM05D000141 ORTHO05D001968 9.8e-09 64.7 87 41.4
Eucgr.E03592 Eucalyptus grandis HOM05D000141 ORTHO05D001968 9.8e-09 64.7 88 40.9
Rhsim02G0115000 Rhododendron simsii HOM05D000141 ORTHO05D001968 9.8e-09 64.7 87 40.2
RcHm_v2.0_Chr5g0004491 Rosa chinensis HOM05D000141 ORTHO05D001968 9.8e-09 64.7 86 40.7
Sed0021398 Sechium edule HOM05D000141 ORTHO05D001968 9.8e-09 64.7 88 39.8
Zm00001eb069600 Zea mays HOM05D000141 ORTHO05D001968 9.8e-09 64.7 97 37.1
Gohir.A10G016600 Gossypium hirsutum HOM05D000141 ORTHO05D001968 1.3e-08 64.3 88 39.8
Gohir.D10G016700 Gossypium hirsutum HOM05D000141 ORTHO05D001968 1.3e-08 64.3 88 39.8
Gorai.011G018600 Gossypium raimondii HOM05D000141 ORTHO05D001968 1.3e-08 64.3 88 39.8
Manes.15G077400 Manihot esculenta HOM05D000141 ORTHO05D001968 1.3e-08 64.3 88 38.6
Prupe.4G029200 Prunus persica HOM05D000141 ORTHO05D001968 1.3e-08 64.3 88 38.6
PGR004G2431 Punica granatum HOM05D000141 ORTHO05D001968 1.3e-08 64.3 87 40.2
Glyma.06G266500 Glycine max HOM05D000141 ORTHO05D001968 1.7e-08 63.9 88 38.6
Glyma.12G136600 Glycine max HOM05D000141 ORTHO05D001968 1.7e-08 63.9 88 38.6
Nitab4.5_0000397g0150 Nicotiana tabacum HOM05D000141 ORTHO05D001968 1.7e-08 63.9 88 38.6
Nitab4.5_0002238g0070 Nicotiana tabacum HOM05D000141 ORTHO05D001968 1.7e-08 63.9 88 38.6
Phvul.011G141500 Phaseolus vulgaris HOM05D000141 ORTHO05D001968 1.7e-08 63.9 88 38.6
Psat7g105400 Pisum sativum HOM05D000141 ORTHO05D001968 1.7e-08 63.9 88 40.9
VMungo1127G0154 Vigna mungo HOM05D000141 ORTHO05D001968 1.7e-08 63.9 88 38.6
ECA236G1483 Erigeron canadensis HOM05D000141 ORTHO05D001968 2.2e-08 63.5 87 40.2
Lj1C1222T7 Lonicera japonica HOM05D000141 ORTHO05D001968 2.2e-08 63.5 87 42.5
ATR1088G030 Amborella trichopoda HOM05D000141 ORTHO05D001968 2.9e-08 63.2 88 37.5
AL6G48790 Arabidopsis lyrata HOM05D000141 ORTHO05D001968 2.9e-08 63.2 88 39.8
AT4G05190 Arabidopsis thaliana HOM05D000141 ORTHO05D001968 2.9e-08 63.2 88 39.8
Ciclev10014313m.g Citrus clementina HOM05D000141 ORTHO05D001968 2.9e-08 63.2 88 39.8
MELO3C018132.2 Cucumis melo HOM05D000141 ORTHO05D001968 2.9e-08 63.2 88 38.6
Dinv18940 Davidia involucrata HOM05D000141 ORTHO05D001968 2.9e-08 63.2 89 41.6
Thhalv10028442m.g Eutrema salsugineum HOM05D000141 ORTHO05D001968 2.9e-08 63.2 88 39.8
MBI18_g25922_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 2.9e-08 63.2 88 39.8
MBI18_g28070_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 2.9e-08 63.2 88 39.8
MD03G1212900 Malus domestica HOM05D000141 ORTHO05D001968 2.9e-08 63.2 104 35.6
MD11G1228000 Malus domestica HOM05D000141 ORTHO05D001968 2.9e-08 63.2 104 35.6
BcaB05g23695 Brassica carinata HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 39.8
BcaC04g21383 Brassica carinata HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 39.8
C09p32450 Brassica napus HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 39.8
BolC9t56090H Brassica oleracea HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 39.8
CiPaw.11G182900 Carya illinoinensis HOM05D000141 ORTHO05D001968 3.7e-08 62.8 104 34.6
CsaV3_3G022850 Cucumis sativus L. HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 38.6
Migut.I01215 Erythranthe guttata HOM05D000141 ORTHO05D001968 3.7e-08 62.8 155 31.6
MD10G1311800 Malus domestica HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 37.5
Peaxi162Scf01086g00147 Petunia axillaris HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 37.5
Sp6g03800 Schrenkiella parvula HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 39.8
THA.LOC104813408 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 3.7e-08 62.8 88 38.6
HPP92_016541 Vanilla planifolia HOM05D000141 ORTHO05D001968 3.7e-08 62.8 89 36.0
Aqoxy1G03802 Aquilegia oxysepala HOM05D000141 ORTHO05D001968 4.9e-08 62.4 89 39.3
TWI39G1256 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 4.9e-08 62.4 88 38.6
ClCG05G014830 Citrullus lanatus HOM05D000141 ORTHO05D001968 6.4e-08 62.0 88 37.5
Sabra11G0018700 Salix brachista HOM05D000141 ORTHO05D001968 6.4e-08 62.0 88 38.6
Sabra11G0024600 Salix brachista HOM05D000141 ORTHO05D001968 6.4e-08 62.0 88 38.6
BcaB01g01891 Brassica carinata HOM05D000141 ORTHO05D001968 8.3e-08 61.6 88 38.6
A09p25540 Brassica napus HOM05D000141 ORTHO05D001968 8.3e-08 61.6 88 38.6
BraA09t38129Z Brassica rapa HOM05D000141 ORTHO05D001968 8.3e-08 61.6 88 38.6
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 8.3e-08 61.6 88 36.4
Lsat_1_v5_gn_7_18261 Lactuca sativa HOM05D000141 ORTHO05D001968 8.3e-08 61.6 87 36.8
MBI02_g29712_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 8.3e-08 61.6 89 37.1
Oeu013860.1 Olea europaea HOM05D000141 ORTHO05D001968 8.3e-08 61.6 88 39.8
TWI63G0112 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 8.3e-08 61.6 88 38.6
Lalb_Chr19g0134711 Lupinus albus HOM05D000141 ORTHO05D001968 1.1e-07 61.2 88 36.4
MSTRG.6886 Avicennia marina HOM05D000141 ORTHO05D001968 1.4e-07 60.8 88 38.6
Atru.chr10.2105 Acer truncatum HOM05D000141 ORTHO05D001968 1.8e-07 60.5 86 40.7
Potri.011G031200 Populus trichocarpa HOM05D000141 ORTHO05D001968 1.8e-07 60.5 89 37.1
Cfa019444 Carpinus fangiana HOM05D000141 ORTHO05D001311 3.2e-07 59.7 85 37.6
Haze_08513 Corylus avellana HOM05D000141 ORTHO05D001311 3.2e-07 59.7 85 37.6
DCAR_024924 Daucus carota HOM05D000141 ORTHO05D001968 3.2e-07 59.7 87 39.1
Cre03.g200600 Chlamydomonas reinhardtii HOM05D000141 ORTHO05D001968 4.1e-07 59.3 75 36.0
Dinv03066 Davidia involucrata HOM05D022610 ORTHO05D029232 4.1e-07 59.3 87 40.2
Gohir.A04G022500 Gossypium hirsutum HOM05D000141 ORTHO05D001968 4.1e-07 59.3 88 36.4
Gohir.D05G364900 Gossypium hirsutum HOM05D000141 ORTHO05D001968 4.1e-07 59.3 88 36.4
Gorai.009G427400 Gossypium raimondii HOM05D000141 ORTHO05D001968 4.1e-07 59.3 88 36.4
Potri.004G031600 Populus trichocarpa HOM05D000141 ORTHO05D001968 4.1e-07 59.3 89 37.1
AUR62037929 Chenopodium quinoa HOM05D000141 ORTHO05D001311 5.4e-07 58.9 85 40.0
AUR62042369 Chenopodium quinoa HOM05D000141 ORTHO05D001311 5.4e-07 58.9 155 29.7
DCAR_019643 Daucus carota HOM05D000141 ORTHO05D001311 7.0e-07 58.5 83 39.8
Aqoxy4G00059 Aquilegia oxysepala HOM05D000141 ORTHO05D001311 1.6e-06 57.4 85 35.3
MD10G1197400 Malus domestica HOM05D000141 ORTHO05D001311 2.0e-06 57.0 85 38.8
Dinv03067 Davidia involucrata HOM05D022610 ORTHO05D029232 2.7e-06 56.6 97 38.1
Actinidia20594 Actinidia chinensis HOM05D000141 ORTHO05D001311 3.5e-06 56.2 85 37.6
Nn3g20438 Nelumbo nucifera HOM05D000141 ORTHO05D001311 4.6e-06 55.8 85 37.6
COL.COLO4_07051 Corchorus olitorius HOM05D000141 ORTHO05D001311 7.8e-06 55.1 85 38.8


User provided reference genes

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