Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 0.0e+00 1554.3 871 100.0
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 0.0e+00 1542.7 871 99.5
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 0.0e+00 1194.9 896 75.4
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 0.0e+00 1130.2 889 72.6
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 0.0e+00 1099.7 876 70.5
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 0.0e+00 1085.1 902 67.7
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.5e-308 1062.0 879 68.8
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 2.0e-305 1052.4 870 69.8
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.8e-298 1029.2 763 76.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.0e-298 1028.5 870 68.7
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 7.7e-294 1013.8 874 67.7
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.5e-292 1008.8 813 70.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-291 1006.5 847 69.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.8e-290 1002.7 877 65.6
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.7e-288 996.1 881 65.3
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.5e-284 983.0 894 63.4
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 2.1e-283 979.2 894 64.8
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.7e-283 978.0 893 65.6
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.8e-282 976.1 876 63.2
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.0e-282 974.9 892 63.6
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 5.2e-282 974.5 762 71.7
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 3.4e-281 971.8 894 65.5
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 9.8e-281 970.3 876 63.8
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 8.3e-280 967.2 924 60.1
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-279 966.5 843 66.8
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.5e-278 961.8 843 66.9
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.5e-278 961.4 841 65.9
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.0e-274 948.3 885 62.6
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.1e-271 938.3 843 66.0
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 7.0e-271 937.6 811 67.0
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 3.5e-270 935.3 843 64.2
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 3.5e-270 935.3 839 63.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 7.8e-270 934.1 843 63.7
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 3.0e-269 932.2 876 61.9
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 5.0e-269 931.4 885 59.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.0e-269 931.4 879 62.8
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 3.6e-267 925.2 882 59.2
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 4.0e-266 921.8 881 61.4
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.6e-265 919.1 893 60.2
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.5e-265 917.5 900 59.4
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 9.8e-265 917.1 887 60.3
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.2e-264 916.0 882 59.1
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.1e-263 913.7 870 62.1
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 3.5e-262 908.7 887 59.8
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.5e-260 902.5 790 65.9
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 5.6e-260 901.4 855 61.1
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 7.3e-260 901.0 878 59.1
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.2e-259 900.2 850 61.8
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 4.0e-258 895.2 888 62.4
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.5e-257 893.3 956 56.2
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.6e-257 892.5 777 67.3
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 4.4e-257 891.7 894 60.5
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 4.4e-257 891.7 880 61.7
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.7e-256 889.8 898 60.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.7e-256 888.6 855 60.1
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 7.8e-254 880.9 896 59.9
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 3.0e-253 879.0 871 57.5
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 4.3e-252 875.2 894 58.5
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.3e-252 875.2 896 60.0
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.3e-252 874.4 897 60.1
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 1.3e-248 863.6 875 59.0
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 3.0e-245 852.4 874 60.0
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.1e-242 844.0 916 56.3
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 5.3e-242 841.6 894 57.9
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.7e-240 836.6 852 57.7
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.0e-238 828.2 894 58.6
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.3e-237 826.2 894 58.5
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 4.3e-236 822.0 893 55.8
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.6e-235 818.9 844 58.4
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.9e-234 814.7 894 58.2
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.6e-230 803.5 881 56.4
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.7e-230 802.7 874 56.4
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.0e-225 786.6 878 55.6
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 7.6e-225 784.6 930 54.4
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 7.6e-225 784.6 880 53.5
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 4.2e-223 778.9 910 52.4
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.8e-221 773.5 873 55.4
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.3e-221 773.1 852 56.0
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.1e-221 771.9 856 54.8
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.6e-219 766.9 827 55.1
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 6.2e-219 765.0 681 64.9
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.6e-217 759.6 873 57.0
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.6e-217 759.6 889 55.6
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.0e-213 747.7 850 55.9
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 5.1e-213 745.3 866 51.2
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.3e-212 742.3 891 53.4
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.4e-210 736.5 872 54.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.5e-209 732.3 674 63.4
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.0e-208 731.1 867 52.1
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 8.5e-208 728.0 866 52.8
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 3.2e-207 726.1 778 56.8
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.2e-206 724.2 820 56.6
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 4.1e-202 709.1 893 52.9
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.4e-201 706.1 883 52.5
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.7e-198 695.7 854 51.3
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.2e-195 686.8 782 54.2
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 6.3e-195 685.3 860 51.0
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 4.1e-194 682.6 828 52.2
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.0e-189 666.4 709 56.0
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 1.4e-186 657.5 699 57.2
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 9.1e-186 654.8 828 52.2
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 4.2e-183 646.0 838 51.1
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 6.8e-181 638.6 864 50.6
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 9.8e-180 634.8 867 48.0
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 8.3e-179 631.7 773 53.4
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 2.7e-177 626.7 740 51.9
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 6.5e-176 622.1 622 58.0
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 2.7e-174 616.7 838 49.3
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 5.9e-169 599.0 914 45.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.2e-166 591.3 835 48.1
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 4.7e-166 589.3 769 49.5
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 6.8e-165 585.5 769 49.8
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.2e-155 553.9 765 51.0
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.0e-152 545.0 763 49.8
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.3e-152 543.9 767 49.3
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 8.6e-152 542.0 762 51.2
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 8.6e-152 542.0 867 44.1
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 6.2e-150 535.8 763 50.5
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.4e-149 534.6 838 43.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 2.9e-147 526.9 896 43.5
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 3.3e-143 513.5 776 48.8
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 5.6e-143 512.7 764 48.7
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-141 508.4 502 60.2
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 3.7e-139 500.0 858 43.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 5.1e-136 489.6 849 41.5
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.1e-134 484.2 319 84.3
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.1e-134 484.2 319 84.3
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.2e-131 474.2 733 48.3
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 3.8e-131 473.4 731 47.9
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 6.4e-131 472.6 815 40.9
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.0e-128 465.3 757 46.0
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.9e-127 461.1 767 47.3
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 6.2e-126 456.1 728 46.4
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 2.9e-123 447.2 731 46.5
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.9e-122 444.5 732 46.7
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 9.9e-116 422.2 724 45.4
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.2e-108 398.7 413 57.6
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-103 382.1 375 60.8
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 3.2e-90 337.4 287 66.6
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 2.2e-86 324.7 969 33.7
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 4.8e-86 323.6 665 39.4
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.0e-75 289.3 420 45.5
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 7.2e-74 283.1 727 35.9
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 8.8e-72 276.2 896 33.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 2.0e-68 265.0 768 35.2
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 5.2e-64 250.4 842 30.0
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 5.4e-61 240.4 738 30.9
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.1e-58 232.6 361 44.9
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 7.0e-45 186.8 144 72.2
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-39 169.5 256 42.6
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 5.8e-39 167.2 137 67.9
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 7.5e-39 166.8 137 67.9
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 7.0e-37 160.2 163 52.8
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 4.9e-30 137.5 119 65.5
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 3.3e-26 124.8 130 60.0
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 3.3e-26 124.8 167 46.7
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.8e-25 121.7 117 55.6
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 5.8e-23 114.0 189 40.2
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 3.8e-22 111.3 107 57.9
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 3.5e-20 104.8 164 41.5
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.3e-19 102.1 97 62.9
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 8.6e-19 100.1 210 36.2
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 4.0e-16 91.3 134 41.8
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 4.0e-16 91.3 77 63.6
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 8.9e-16 90.1 201 37.8
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 1.5e-15 89.4 451 28.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 1.5e-15 89.4 413 29.8
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 2.0e-15 89.0 125 43.2
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 5.8e-15 87.4 87 57.5
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 5.8e-15 87.4 87 57.5
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 2.1e-12 79.0 197 34.5
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 7.8e-12 77.0 187 36.4
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 6.6e-11 73.9 63 63.5
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 5.6e-10 70.9 169 36.7
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 1.3e-09 69.7 107 43.0
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 6.2e-09 67.4 34 91.2
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 4.0e-08 64.7 77 42.9
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 5.3e-08 64.3 76 43.4
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 6.9e-08 63.9 45 64.4
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 9.0e-08 63.5 97 43.3
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 2.6e-07 62.0 72 51.4
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 1.3e-06 59.7 152 36.2


User provided reference genes

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