Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 0.0e+00 2388.6 1210 100.0
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 0.0e+00 1490.3 1218 66.3
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 0.0e+00 1431.0 1218 64.8
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 0.0e+00 1297.0 1218 58.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 4.2e-229 799.3 1295 41.9
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.6e-209 734.2 1258 41.1
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.8e-208 730.7 1258 41.1
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 2.5e-205 720.3 1260 40.9
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 3.5e-204 716.5 1268 39.6
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.4e-200 703.7 1262 40.3
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 7.6e-199 698.7 1244 38.7
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.8e-195 687.6 1247 38.3
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 2.3e-195 687.2 1230 40.1
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 9.7e-194 681.8 1314 38.7
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.3e-193 681.4 1260 39.5
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.7e-185 654.4 1222 39.0
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 8.2e-185 652.1 1314 38.3
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 5.7e-178 629.4 1301 37.6
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.1e-176 625.2 1343 37.1
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 5.3e-176 622.9 1003 43.5
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 2.5e-173 614.0 1303 37.7
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.1e-172 610.9 1307 37.0
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.6e-170 604.0 1342 36.8
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 3.8e-166 590.1 1219 37.3
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.7e-164 583.9 1240 37.0
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 2.3e-163 580.9 1204 37.1
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 5.2e-163 579.7 1222 37.5
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.7e-161 574.7 1238 35.8
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.5e-157 560.8 1235 36.2
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 6.8e-155 552.7 1232 36.4
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-151 542.0 1273 36.0
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.6e-150 536.2 954 41.2
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 9.5e-149 532.3 512 57.6
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 6.8e-147 526.2 1189 36.3
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.1e-141 508.8 907 39.0
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 2.8e-140 504.2 1182 35.5
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.2e-127 462.2 1223 33.4
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.1e-124 451.4 1223 33.4
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 5.4e-120 436.8 1220 32.5
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.9e-117 428.3 1006 36.4
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 6.6e-102 376.7 988 34.4
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.9e-101 375.2 1254 29.0
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.3e-100 372.5 968 34.6
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 9.9e-98 362.8 992 32.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 2.1e-95 355.1 1273 28.7
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 7.9e-95 353.2 1274 30.1
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 7.9e-95 353.2 1274 30.1
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.0e-94 352.8 1068 32.1
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-91 342.4 855 36.0
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.4e-91 341.7 1069 32.3
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 3.4e-90 337.8 1108 32.2
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 5.8e-90 337.0 1221 30.0
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 3.5e-87 327.8 1142 30.2
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 7.9e-87 326.6 1243 29.4
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.0e-86 324.7 1251 30.0
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 2.5e-85 321.6 1222 29.1
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.6e-84 318.9 1263 29.1
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 8.2e-84 316.6 1163 29.6
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.4e-83 315.8 1243 28.9
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.7e-81 308.9 538 40.7
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 2.9e-81 308.1 1260 28.7
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.2e-79 302.8 1000 29.4
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.9e-73 281.6 868 31.6
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.2e-71 276.2 1118 28.8
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.0e-70 273.1 1331 26.9
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.8e-70 272.3 1264 28.2
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 2.8e-68 265.0 984 30.5
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 2.5e-64 251.9 1304 26.8
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 3.9e-62 244.6 1033 29.5
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 4.4e-61 241.1 1249 26.5
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.3e-60 239.6 1063 29.0
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 7.7e-58 230.3 943 29.1
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.9e-56 225.7 1011 29.4
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 4.7e-55 221.1 480 37.7
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 6.1e-55 220.7 1027 29.2
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 3.0e-54 218.4 1007 29.1
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.0e-53 215.7 1026 29.3
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.6e-53 215.3 446 35.0
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 4.4e-53 214.5 1008 28.8
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.1e-51 208.4 1265 26.1
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.1e-51 208.4 1265 26.2
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.2e-49 202.2 1029 28.7
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 6.8e-46 190.7 991 26.8
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.3e-44 186.4 1036 28.0
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 1.4e-43 183.0 1348 24.4
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 5.4e-43 181.0 717 28.2
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 9.1e-43 180.3 1041 27.1
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 7.7e-42 177.2 1350 23.9
QL09p006814 Quercus lobata HOM05D006657 ORTHO05D005964 1.9e-40 172.6 91 87.9
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.2e-40 171.4 234 46.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.0e-37 162.5 1338 24.0
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 2.6e-37 162.2 1265 24.7
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 2.2e-36 159.1 1263 25.6
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.1e-35 155.2 1341 23.7
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 4.5e-34 151.4 784 26.1
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 1.0e-33 150.2 495 31.5
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.8e-31 142.1 980 26.3
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.4e-30 139.8 966 26.3
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.8e-30 137.5 525 27.6
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.4e-29 134.8 708 27.3
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.1e-27 130.2 1157 25.0
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 9.2e-27 127.1 1332 23.0
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 9.2e-27 127.1 513 26.5
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 4.6e-26 124.8 1254 23.3
QL09p006824 Quercus lobata HOM05D000005 ORTHO05D000012 7.8e-26 124.0 107 60.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 9.5e-24 117.1 923 24.5
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 2.8e-23 115.5 435 28.5
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 6.2e-23 114.4 440 29.3
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 3.1e-22 112.1 227 40.5
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 7.5e-21 107.5 1069 22.5
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 3.7e-20 105.1 356 29.8
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 1.1e-19 103.6 264 36.7
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 1.6e-18 99.8 275 33.8
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.6e-18 99.8 562 25.6
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.3e-17 96.7 369 28.5
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 2.3e-17 95.9 997 24.0
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 9.5e-16 90.5 403 27.8
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 4.7e-15 88.2 132 37.9
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 5.2e-14 84.7 1090 22.3
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.2e-13 83.6 496 25.6
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.5e-13 83.2 1327 22.7
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 4.4e-13 81.6 537 24.2
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 4.4e-13 81.6 486 26.3
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.3e-12 80.1 536 25.0
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 1.7e-12 79.7 470 27.9
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 2.2e-12 79.3 183 32.2
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 1.4e-11 76.6 283 27.2
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 3.2e-11 75.5 946 21.2
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 7.1e-11 74.3 245 30.2
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 1.2e-10 73.6 223 30.0
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 1.6e-10 73.2 432 26.9
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 3.5e-10 72.0 225 28.4
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 3.5e-10 72.0 429 24.7
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 6.0e-10 71.2 683 24.3
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 5.1e-09 68.2 332 26.8
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 5.1e-09 68.2 388 24.2
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 5.1e-09 68.2 454 23.8
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 8.6e-09 67.4 527 23.7
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 8.6e-09 67.4 527 23.7
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 1.5e-08 66.6 233 27.9
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 1.5e-08 66.6 371 26.4
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 1.5e-08 66.6 233 27.9
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 1.9e-08 66.2 426 24.4
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 2.5e-08 65.9 233 27.9
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 3.3e-08 65.5 437 23.8
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 4.3e-08 65.1 427 24.8
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 4.3e-08 65.1 427 24.8
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 4.3e-08 65.1 313 28.1
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 7.3e-08 64.3 284 27.5
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 7.3e-08 64.3 284 27.5
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 7.3e-08 64.3 579 21.6
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 9.5e-08 63.9 424 25.0
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 1.6e-07 63.2 469 25.2
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 2.1e-07 62.8 639 23.8
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.1e-06 60.5 391 25.1
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 1.1e-06 60.5 454 24.4
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.8e-06 59.7 83 42.2
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 1.8e-06 59.7 452 25.4
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.3e-06 59.3 80 42.5
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 5.2e-06 58.2 102 35.3
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 5.2e-06 58.2 102 35.3
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 5.2e-06 58.2 256 25.0
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 6.8e-06 57.8 302 23.8


User provided reference genes

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