Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.1e-83 313.2 146 100.0
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 9.9e-69 263.5 146 84.9
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 9.9e-69 263.5 146 83.6
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 84.2
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 4.9e-68 261.2 147 85.7
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 2.4e-67 258.8 147 83.7
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.2e-67 258.5 146 83.6
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 3.2e-67 258.5 146 85.6
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 4.2e-67 258.1 146 81.5
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 9.3e-67 256.9 147 83.7
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 9.3e-67 256.9 146 81.5
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 82.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 4.6e-66 254.6 144 82.6
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 4.6e-66 254.6 146 83.6
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 7.8e-66 253.8 145 80.7
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.0e-65 253.4 145 82.1
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.0e-65 253.4 145 82.1
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.0e-65 253.4 147 81.6
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.3e-65 253.1 146 83.6
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.3e-65 253.1 146 83.6
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.3e-65 253.1 146 80.8
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 3.9e-65 251.5 149 80.5
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 3.9e-65 251.5 147 81.0
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 5.1e-65 251.1 145 80.7
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 6.6e-65 250.8 145 81.4
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 8.7e-65 250.4 146 80.8
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 8.7e-65 250.4 146 80.8
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.1e-64 250.0 146 80.8
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.1e-64 250.0 146 80.8
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.1e-64 250.0 148 82.4
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.5e-64 249.6 146 81.5
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.5e-64 249.6 146 82.2
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.9e-64 249.2 146 78.8
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 2.5e-64 248.8 146 80.1
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.5e-64 248.8 147 79.6
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.5e-64 248.8 147 79.6
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 3.3e-64 248.4 146 80.8
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 76.7
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 78.8
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 80.3
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 4.3e-64 248.1 148 81.8
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 7.3e-64 247.3 145 80.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 7.3e-64 247.3 147 81.0
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 78.8
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 1.3e-63 246.5 139 80.6
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 78.8
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.1e-63 245.7 147 78.9
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 3.6e-63 245.0 146 78.1
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.6e-63 245.0 148 81.8
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 78.1
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 78.1
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 78.1
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 77.4
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 76.7
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 76.7
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 76.7
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 77.4
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 78.8
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 75.3
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 78.1
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 78.8
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.3e-62 241.1 141 80.9
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 74.0
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 76.7
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 77.4
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 74.0
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 76.0
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 76.7
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.0e-61 239.2 147 78.2
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 76.7
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 2.6e-61 238.8 150 74.0
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 79.5
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 75.3
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 76.7
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 76.0
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 4.5e-61 238.0 147 78.2
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 5.8e-61 237.7 147 76.9
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 74.7
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 2.2e-60 235.7 141 72.3
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.2e-60 235.7 148 75.7
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.2e-60 235.7 145 75.9
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 3.8e-60 235.0 147 74.8
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.8e-60 235.0 140 72.1
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 4.9e-60 234.6 146 74.7
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 8.4e-60 233.8 148 78.4
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 8.4e-60 233.8 146 76.7
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.4e-59 233.0 140 72.1
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.4e-59 233.0 144 75.0
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.9e-59 232.6 145 77.2
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.4e-59 232.3 147 74.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 7.1e-59 230.7 149 75.2
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 7.1e-59 230.7 146 74.0
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 7.1e-59 230.7 138 78.3
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 73.0
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.6e-58 229.6 149 73.2
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 2.7e-58 228.8 144 72.9
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 4.6e-58 228.0 147 74.8
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.9e-58 227.3 133 80.5
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 7.9e-58 227.3 133 80.5
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 7.9e-58 227.3 149 73.2
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.3e-57 226.5 131 80.9
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.3e-57 226.5 150 74.0
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.8e-57 226.1 149 72.5
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.8e-57 226.1 146 73.3
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.3e-57 225.7 133 80.5
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 8.7e-57 223.8 140 70.7
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 8.7e-57 223.8 149 73.8
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 8.7e-57 223.8 147 71.4
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 8.7e-57 223.8 147 71.4
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-56 223.4 147 72.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-56 223.4 147 72.1
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 3.3e-56 221.9 147 73.5
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.3e-56 221.5 130 72.3
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 9.6e-56 220.3 146 71.2
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.3e-55 219.9 151 72.2
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 3.7e-55 218.4 150 68.7
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 4.8e-55 218.0 138 71.7
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 6.2e-55 217.6 146 71.2
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.4e-54 216.5 132 72.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.4e-54 215.7 119 81.5
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 6.9e-54 214.2 151 68.2
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 9.0e-54 213.8 146 71.9
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 71.3
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 71.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 71.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 71.3
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 2.0e-53 212.6 150 69.3
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 2.0e-53 212.6 150 69.3
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 4.5e-53 211.5 150 68.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.3e-52 209.9 150 70.0
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 3.8e-52 208.4 146 63.7
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.1e-51 206.8 124 80.6
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.2e-51 204.9 117 77.8
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 5.5e-51 204.5 146 63.7
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-50 203.0 133 75.2
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 2.7e-50 202.2 148 68.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 2.7e-50 202.2 148 68.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 2.7e-50 202.2 148 68.2
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.1e-48 196.8 151 66.2
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 3.3e-48 195.3 146 67.1
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 4.3e-48 194.9 146 67.1
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 1.6e-47 193.0 134 69.4
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 6.0e-42 174.5 149 65.1
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 3.3e-40 168.7 100 79.0
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 9.7e-40 167.2 100 73.0
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.5e-37 159.8 146 57.5
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.2e-36 156.0 146 58.2
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.9e-35 152.9 96 78.1
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.2e-34 150.2 147 52.4
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.4e-30 136.7 122 54.1
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 9.7e-24 114.0 155 41.3
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.3e-20 103.6 67 71.6
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.7e-20 103.2 128 48.4
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 6.5e-20 101.3 74 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 9.4e-19 97.4 90 50.0
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 5.2e-09 65.1 38 76.3
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 5.2e-09 65.1 53 47.2
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 5.3e-06 55.1 66 37.9


User provided reference genes

Program Settings