Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 4.7e-42 174.5 114 100.0
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.4e-17 93.2 85 74.1
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 5.3e-17 91.3 99 53.5
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.2e-16 90.1 116 56.0
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.6e-16 89.0 99 68.7
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.5e-16 88.2 86 55.8
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 2.2e-15 85.9 108 58.3
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.2e-15 85.9 110 61.8
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.9e-15 85.5 110 63.6
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 2.9e-15 85.5 88 55.7
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.9e-15 84.7 110 60.0
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.9e-15 84.7 110 63.6
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.9e-15 84.7 110 63.6
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 6.4e-15 84.3 88 52.3
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 8.4e-15 84.0 99 66.7
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 8.4e-15 84.0 110 62.7
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.1e-14 83.6 110 48.2
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 2.4e-14 82.4 102 68.6
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.4e-14 82.4 92 57.6
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.2e-14 82.0 91 50.5
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.2e-14 82.0 91 50.5
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 3.2e-14 82.0 78 61.5
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 3.2e-14 82.0 105 51.4
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 4.2e-14 81.6 95 53.7
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 4.2e-14 81.6 95 53.7
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 5.4e-14 81.3 84 59.5
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 5.4e-14 81.3 113 57.5
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 5.4e-14 81.3 93 52.7
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.1e-14 80.9 110 50.9
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 7.1e-14 80.9 90 48.9
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 9.3e-14 80.5 113 46.9
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 9.3e-14 80.5 92 56.5
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.2e-13 80.1 86 52.3
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.2e-13 80.1 116 59.5
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.6e-13 79.7 113 58.4
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 2.1e-13 79.3 77 63.6
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.7e-13 79.0 111 49.5
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.7e-13 79.0 85 54.1
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 2.7e-13 79.0 102 58.8
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 2.7e-13 79.0 102 52.0
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 3.5e-13 78.6 74 56.8
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 3.5e-13 78.6 72 62.5
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 3.5e-13 78.6 85 49.4
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 3.5e-13 78.6 85 71.8
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 4.6e-13 78.2 95 58.9
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 4.6e-13 78.2 95 51.6
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 6.0e-13 77.8 79 51.9
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 6.0e-13 77.8 88 50.0
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 6.0e-13 77.8 93 59.1
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 6.0e-13 77.8 115 47.8
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 7.9e-13 77.4 73 72.6
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 7.9e-13 77.4 100 51.0
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.9e-13 77.4 100 49.0
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.3e-12 76.6 101 49.5
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.3e-12 76.6 95 62.1
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.8e-12 76.3 110 47.3
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 1.8e-12 76.3 100 66.0
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.3e-12 75.9 122 41.8
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.3e-12 75.9 92 58.7
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.3e-12 75.9 110 57.3
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.3e-12 75.9 83 50.6
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 3.0e-12 75.5 83 49.4
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 3.0e-12 75.5 90 61.1
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.9e-12 75.1 78 69.2
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.9e-12 75.1 94 63.8
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 3.9e-12 75.1 87 55.2
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.9e-12 75.1 90 61.1
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 5.1e-12 74.7 87 50.6
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.1e-12 74.7 113 56.6
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 5.1e-12 74.7 90 64.4
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 5.1e-12 74.7 90 47.8
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 6.7e-12 74.3 99 59.6
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 6.7e-12 74.3 79 63.3
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 6.7e-12 74.3 79 63.3
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 6.7e-12 74.3 78 55.1
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 6.7e-12 74.3 91 65.9
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 6.7e-12 74.3 73 69.9
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 8.7e-12 73.9 95 51.6
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 8.7e-12 73.9 85 64.7
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 8.7e-12 73.9 101 58.4
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.1e-11 73.6 100 48.0
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 1.1e-11 73.6 84 60.7
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-11 73.2 84 53.6
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.5e-11 73.2 101 62.4
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 1.9e-11 72.8 100 57.0
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.9e-11 72.8 89 51.7
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 3.3e-11 72.0 93 49.5
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 4.3e-11 71.6 88 50.0
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 4.3e-11 71.6 85 51.8
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 5.6e-11 71.2 44 77.3
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.6e-11 71.2 85 51.8
Duzib068G1330 Durio zibethinus HOM05D003381 ORTHO05D003880 7.4e-11 70.9 112 58.9
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 7.4e-11 70.9 73 54.8
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 9.6e-11 70.5 100 47.0
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 9.6e-11 70.5 116 56.9
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.3e-10 70.1 103 58.3
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.3e-10 70.1 99 45.5
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.6e-10 69.7 81 50.6
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.6e-10 69.7 92 48.9
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.6e-10 69.7 89 59.6
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 2.1e-10 69.3 107 43.9
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 2.8e-10 68.9 85 50.6
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.8e-10 68.9 85 49.4
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.8e-10 68.9 115 45.2
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 3.6e-10 68.6 90 50.0
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 3.6e-10 68.6 110 45.5
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 4.8e-10 68.2 83 50.6
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 4.8e-10 68.2 76 48.7
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 6.2e-10 67.8 74 52.7
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 6.2e-10 67.8 93 46.2
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.2e-10 67.8 85 57.6
Duzib205G0505 Durio zibethinus HOM05D003381 ORTHO05D003880 1.1e-09 67.0 85 64.7
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.1e-09 67.0 105 47.6
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-09 66.6 92 48.9
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 1.4e-09 66.6 92 48.9
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.4e-09 66.6 81 46.9
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 1.8e-09 66.2 92 47.8
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.8e-09 66.2 90 51.1
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 1.8e-09 66.2 80 46.2
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 3.1e-09 65.5 92 46.7
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 3.1e-09 65.5 104 48.1
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 3.1e-09 65.5 90 48.9
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 3.1e-09 65.5 102 53.9
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 3.1e-09 65.5 102 45.1
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.0e-09 65.1 90 48.9
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.3e-09 64.7 92 46.7
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.3e-09 64.7 73 47.9
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 5.3e-09 64.7 76 46.1
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 6.9e-09 64.3 92 46.7
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 6.9e-09 64.3 86 46.5
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 9.0e-09 63.9 55 67.3
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.2e-08 63.5 78 44.9
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.2e-08 63.5 73 50.7
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.2e-08 63.5 77 44.2
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.2e-08 63.5 101 55.4
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.5e-08 63.2 103 45.6
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-08 62.8 92 46.7
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 2.6e-08 62.4 79 50.6
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 2.6e-08 62.4 79 50.6
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.6e-08 62.4 80 62.5
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 3.4e-08 62.0 92 45.7
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 3.4e-08 62.0 92 45.7
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 3.4e-08 62.0 58 55.2
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 4.5e-08 61.6 92 44.6
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 4.5e-08 61.6 103 42.7
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.5e-08 61.6 79 49.4
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 5.8e-08 61.2 86 43.0
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 5.8e-08 61.2 53 64.2
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 5.8e-08 61.2 66 51.5
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 5.8e-08 61.2 107 40.2
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 5.8e-08 61.2 74 48.6
Thecc.03G212200 Theobroma cacao HOM05D003381 ORTHO05D003880 5.8e-08 61.2 101 59.4
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 7.6e-08 60.8 92 47.8
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 9.9e-08 60.5 94 43.6
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 9.9e-08 60.5 40 75.0
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.3e-07 60.1 41 70.7
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.7e-07 59.7 107 40.2
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 1.7e-07 59.7 85 41.2
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.2e-07 59.3 104 39.4
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 2.2e-07 59.3 77 58.4
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.9e-07 58.9 107 40.2
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 4.9e-07 58.2 87 40.2
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 4.9e-07 58.2 87 40.2
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 4.9e-07 58.2 87 40.2
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 4.9e-07 58.2 87 40.2
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 4.9e-07 58.2 97 39.2
SEGI_32433 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 6.4e-07 57.8 74 45.9
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 1.1e-06 57.0 104 39.4
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 1.1e-06 57.0 104 39.4
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 1.1e-06 57.0 104 39.4
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 1.1e-06 57.0 89 42.7
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.1e-06 57.0 54 51.9
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 1.1e-06 57.0 86 44.2
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.4e-06 56.6 97 51.5
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 1.4e-06 56.6 96 41.7
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-06 56.6 107 42.1
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 1.4e-06 56.6 107 42.1
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.4e-06 56.6 52 61.5
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.4e-06 56.6 79 43.0
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.9e-06 56.2 74 45.9
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.4e-06 55.8 107 40.2
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 2.4e-06 55.8 87 43.7
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 3.2e-06 55.5 114 45.6
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 9.3e-06 53.9 86 43.0


User provided reference genes

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