Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.4e-176 622.9 308 100.0
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.3e-154 548.5 312 86.9
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 4.4e-151 538.1 312 85.3
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 7.5e-151 537.3 312 84.3
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 6.8e-136 487.6 300 80.3
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 2.2e-134 482.6 308 75.3
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 1.1e-133 480.3 310 74.8
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 1.1e-133 480.3 307 74.6
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 5.0e-131 471.5 308 73.7
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 8.6e-131 470.7 310 73.2
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 4.3e-130 468.4 312 73.4
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 2.1e-129 466.1 311 72.3
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.1e-129 466.1 308 72.7
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 6.2e-129 464.5 308 72.1
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 6.2e-129 464.5 310 72.3
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 8.1e-129 464.2 307 71.7
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.1e-128 463.8 309 72.5
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.4e-128 463.4 307 71.7
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.8e-128 463.0 306 71.9
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.8e-128 463.0 305 72.5
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 3.1e-128 462.2 312 72.1
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 6.8e-128 461.1 310 73.5
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 6.8e-128 461.1 310 72.6
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 2.0e-127 459.5 306 71.9
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 9.9e-127 457.2 308 73.1
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 9.9e-127 457.2 312 71.8
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 9.9e-127 457.2 305 73.4
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.2e-126 456.1 304 71.4
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 2.2e-126 456.1 312 70.8
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 2.9e-126 455.7 303 72.6
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 3.7e-126 455.3 311 69.8
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 6.4e-126 454.5 292 75.7
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 2.4e-125 452.6 313 71.2
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 2.4e-125 452.6 307 71.7
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 2.4e-125 452.6 300 75.0
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 3.2e-125 452.2 303 72.3
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 4.1e-125 451.8 306 71.2
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 4.1e-125 451.8 303 71.0
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 9.2e-125 450.7 310 68.7
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.6e-124 449.9 313 69.0
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 6.0e-124 448.0 309 71.2
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 1.0e-123 447.2 307 71.3
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.3e-123 446.8 309 70.9
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.3e-123 446.8 309 70.9
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.3e-123 446.8 300 73.7
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.6e-123 444.5 308 69.5
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.5e-122 443.4 301 71.1
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.9e-122 443.0 308 71.1
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.1e-120 437.2 305 69.8
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.4e-120 436.8 303 71.0
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 3.1e-120 435.6 305 69.2
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 6.8e-120 434.5 308 71.1
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 8.9e-120 434.1 351 63.0
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 9.9e-119 430.6 312 66.0
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 9.9e-119 430.6 310 66.8
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.9e-118 429.1 314 66.9
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.1e-117 427.2 309 67.0
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 1.0e-115 420.6 308 66.9
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 8.7e-115 417.5 307 65.8
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.1e-114 417.2 309 65.0
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 1.5e-114 416.8 307 66.4
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 3.3e-114 415.6 302 67.2
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 9.6e-114 414.1 311 65.6
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 2.1e-113 412.9 309 66.0
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 2.8e-113 412.5 308 65.9
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.8e-113 412.5 303 67.3
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 3.6e-113 412.1 306 67.0
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 4.7e-113 411.8 309 64.4
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 1.1e-112 410.6 275 73.1
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 5.2e-112 408.3 307 65.5
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 6.9e-112 407.9 307 65.1
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 5.8e-111 404.8 306 67.3
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 5.8e-111 404.8 291 67.7
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 7.6e-111 404.4 308 65.3
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 1.7e-110 403.3 300 67.3
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 1.4e-109 400.2 309 64.1
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.3e-109 397.5 299 68.9
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.3e-109 397.5 299 69.2
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.5e-108 395.6 299 68.6
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 3.5e-108 395.6 306 63.7
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 6.0e-108 394.8 298 64.8
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 7.8e-108 394.4 299 68.6
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.0e-107 392.5 298 68.5
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.0e-107 392.5 298 68.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 5.1e-107 391.7 299 68.2
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.6e-107 391.3 299 67.9
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.7e-107 391.0 299 68.2
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.7e-107 391.0 299 68.2
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 9.6e-106 387.5 288 66.7
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 4.8e-105 385.2 309 62.8
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.1e-104 384.0 305 62.0
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.8e-104 383.3 311 61.1
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 6.9e-104 381.3 263 69.6
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.8e-103 378.3 236 73.3
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.8e-102 375.6 301 64.8
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 6.4e-102 374.8 304 61.5
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.4e-102 374.8 306 60.5
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.4e-101 373.6 306 59.8
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.2e-100 370.5 308 58.8
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.5e-100 369.0 303 59.4
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 3.5e-100 369.0 303 61.1
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-98 364.0 306 60.5
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 3.7e-97 359.0 303 58.7
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.1e-96 357.5 304 59.5
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 1.8e-96 356.7 306 56.9
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.1e-96 355.9 248 67.3
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 4.0e-96 355.5 304 57.6
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 9.0e-96 354.4 316 60.1
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 4.9e-94 348.6 352 52.6
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 6.4e-94 348.2 306 55.9
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.3e-93 344.4 303 56.4
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 2.1e-92 343.2 308 62.0
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 6.0e-92 341.7 302 54.0
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 3.0e-91 339.3 304 54.6
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 3.0e-91 339.3 304 54.6
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.5e-90 337.0 303 55.8
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 7.4e-90 334.7 305 54.4
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 7.4e-90 334.7 305 54.4
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 9.6e-90 334.3 306 54.2
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 4.8e-89 332.0 305 54.1
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 6.2e-89 331.6 303 55.1
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-88 330.9 208 76.9
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.1e-85 320.9 303 53.1
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.1e-82 310.8 308 51.3
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 9.7e-82 307.8 183 77.6
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 1.6e-81 307.0 305 49.5
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 4.8e-81 305.4 317 49.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 2.2e-78 296.6 314 49.7
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 6.7e-75 285.0 196 65.8
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.1e-72 274.6 225 61.3
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.9e-70 269.6 257 51.8
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 4.7e-60 235.7 150 72.0
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 1.4e-56 224.2 171 60.8
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.0e-55 220.3 144 69.4
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.1e-53 214.5 231 51.5
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 4.7e-52 209.1 159 67.3
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 5.3e-48 195.7 340 37.4
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 2.3e-38 163.7 156 60.3
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 1.6e-36 157.5 224 41.1
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 8.0e-28 128.6 140 48.6
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.6e-26 123.6 77 67.5
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 7.5e-26 122.1 280 31.4
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 3.0e-22 110.2 262 31.3
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.5e-21 107.8 229 30.6
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.4e-18 96.7 88 54.5
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.7e-17 94.4 312 25.3
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 2.2e-17 94.0 101 51.5
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 9.2e-16 88.6 52 75.0
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 1.2e-15 88.2 89 55.1
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 3.5e-15 86.7 51 70.6
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.7e-14 84.3 71 52.1
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.2e-12 75.9 49 63.3
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 4.4e-10 69.7 94 36.2
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 4.4e-10 69.7 53 58.5
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.1e-07 60.8 169 28.4
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 1.7e-06 57.8 50 48.0
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 3.9e-06 56.6 222 27.9


User provided reference genes

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