Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 5.4e-295 1016.9 518 100.0
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 2.6e-265 918.3 519 89.6
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 9.0e-258 893.3 519 86.9
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.4e-250 869.4 511 84.3
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.5e-244 849.4 511 83.2
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 2.0e-244 849.0 516 82.0
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.4e-242 842.0 512 82.0
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 3.5e-241 838.2 517 80.3
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.2e-240 835.5 518 80.9
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.5e-239 832.8 520 80.6
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 7.2e-239 830.5 520 79.4
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 9.4e-239 830.1 519 80.3
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.2e-238 829.7 519 79.4
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 3.6e-238 828.2 517 79.5
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 6.1e-238 827.4 515 79.0
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 8.0e-238 827.0 517 79.9
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.0e-237 826.6 592 72.0
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 4.0e-237 824.7 519 78.4
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 5.2e-237 824.3 519 78.4
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 7.5e-236 820.5 518 77.8
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 7.5e-236 820.5 525 78.7
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 4.1e-234 814.7 519 77.8
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 7.0e-234 813.9 519 77.6
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.2e-233 813.1 519 79.4
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 3.5e-233 811.6 518 76.8
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.9e-232 808.5 536 76.5
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.0e-232 807.7 495 81.6
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.0e-228 795.8 519 76.9
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 2.8e-227 792.0 513 75.4
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.1e-226 790.0 518 76.3
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 2.0e-225 785.8 517 75.4
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 4.5e-225 784.6 511 76.3
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 1.7e-224 782.7 524 75.0
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.8e-224 781.6 509 77.0
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 3.8e-224 781.6 512 77.0
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.5e-223 779.6 518 75.3
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.9e-223 779.2 516 74.8
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 5.5e-223 777.7 519 74.6
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 7.2e-223 777.3 516 74.0
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.6e-222 776.2 490 77.3
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 2.7e-222 775.4 513 76.2
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 3.6e-222 775.0 512 77.1
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 4.7e-222 774.6 522 74.1
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.4e-221 773.1 523 73.6
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 3.0e-221 771.9 520 73.8
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 3.0e-221 771.9 523 73.6
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.5e-220 769.6 520 73.8
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.7e-220 767.7 511 75.1
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.7e-219 766.1 518 73.7
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.7e-219 766.1 511 75.1
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.8e-219 765.4 516 73.8
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.9e-216 755.4 487 79.1
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.1e-215 753.4 478 80.3
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.1e-214 749.2 511 73.4
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 8.9e-213 743.8 510 72.4
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 5.7e-212 741.1 471 78.8
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 3.7e-211 738.4 516 74.8
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 4.1e-210 734.9 516 72.9
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.3e-208 729.2 522 73.0
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 9.5e-207 723.8 624 61.2
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 3.6e-206 721.8 635 60.8
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.5e-204 716.5 496 73.2
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.5e-204 714.1 442 80.5
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.7e-203 713.0 517 69.4
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 2.9e-203 712.2 530 69.8
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 2.9e-203 712.2 530 70.0
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 6.0e-201 704.5 522 68.6
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.5e-199 699.9 545 67.7
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.6e-198 696.4 512 70.5
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.7e-192 676.4 549 63.2
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.1e-192 674.9 492 71.5
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 9.5e-191 670.6 491 70.9
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.1e-189 667.2 447 76.7
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.2e-188 663.7 529 66.4
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 4.4e-188 661.8 409 79.2
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.9e-186 656.4 518 64.1
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 5.4e-186 654.8 458 74.0
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 6.6e-184 647.9 501 66.3
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 1.9e-183 646.4 435 74.7
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.9e-183 646.4 418 77.0
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.5e-183 646.0 498 68.7
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.1e-181 639.0 567 61.0
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 8.4e-179 630.9 418 77.0
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.2e-177 627.1 425 75.5
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.5e-177 625.5 432 73.6
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 4.0e-173 612.1 436 72.2
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.5e-172 608.6 499 64.1
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 3.5e-169 599.0 578 57.8
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.3e-166 590.5 533 60.0
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.8e-165 586.6 554 57.8
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.5e-164 582.0 386 76.7
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-162 577.4 457 66.3
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.1e-162 577.4 423 72.1
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 3.2e-162 575.9 488 60.5
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 9.3e-162 574.3 511 58.7
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 3.3e-151 539.3 447 61.1
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 1.3e-150 537.3 474 61.4
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 1.7e-147 526.9 427 67.2
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 2.2e-147 526.6 474 59.9
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 9.3e-146 521.2 464 59.1
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.7e-145 519.6 425 66.6
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.1e-138 497.7 376 67.8
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.9e-128 462.6 391 64.5
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 4.8e-126 455.7 290 77.6
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 9.1e-125 451.4 514 48.4
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.7e-124 448.4 299 75.6
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.3e-123 447.6 341 68.9
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 7.5e-119 431.8 478 49.4
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 2.6e-111 406.8 502 45.2
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.0e-104 383.3 252 75.8
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.3e-98 362.1 323 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 9.2e-93 345.1 443 44.9
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 6.6e-91 339.0 206 82.5
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 1.6e-89 334.3 232 72.4
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.6e-84 316.2 370 52.2
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.0e-79 300.8 462 42.2
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.0e-75 288.5 190 75.3
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 5.6e-74 282.7 431 41.3
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.9e-69 267.7 187 75.9
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 2.4e-69 267.3 216 67.6
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.1e-67 259.6 430 39.8
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 7.8e-60 235.7 162 71.6
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.5e-58 230.7 659 28.7
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.5e-55 221.5 198 58.6
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.1e-50 205.3 183 59.0
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.7e-44 184.1 160 63.1
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.8e-43 181.4 150 61.3
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 3.3e-42 177.2 466 32.0
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 4.9e-38 163.3 97 85.6
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 5.1e-35 153.3 93 72.0
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.1e-34 152.1 180 49.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.3e-33 146.4 121 56.2
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.5e-31 141.7 86 76.7
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.6e-31 141.0 154 53.9
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.6e-31 141.0 154 53.9
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.1e-29 135.6 93 73.1
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 2.1e-28 131.3 503 27.8
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 6.1e-28 129.8 96 64.6
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 7.9e-28 129.4 103 69.9
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.5e-26 124.4 78 71.8
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.7e-25 121.7 98 68.4
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 7.2e-21 106.3 69 72.5
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.6e-20 105.1 67 80.6
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.8e-19 101.7 62 85.5
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.8e-19 101.7 62 85.5
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.9e-19 100.5 243 36.2
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 9.7e-18 95.9 56 87.5
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.8e-17 93.6 112 42.9
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.5e-15 88.6 54 72.2
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.9e-13 81.6 55 78.2
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 3.2e-13 80.9 74 63.5
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.7e-12 77.0 39 87.2
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 2.2e-06 58.2 192 29.7


User provided reference genes

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