Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 0.0e+00 1476.5 760 100.0
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 5.9e-266 921.0 776 63.8
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 2.1e-231 806.2 754 61.9
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 1.2e-194 684.1 763 52.6
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 1.6e-173 614.0 782 46.4
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 6.1e-170 602.1 780 47.2
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 1.2e-168 597.8 744 47.6
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 2.0e-168 597.0 758 47.9
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 3.4e-168 596.3 769 45.5
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 4.4e-168 595.9 744 47.2
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 9.8e-168 594.7 707 48.1
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 1.6e-165 587.4 783 46.1
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 2.0e-165 587.0 737 48.2
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 8.5e-164 581.6 750 46.3
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 1.6e-162 577.4 745 45.0
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 2.7e-162 576.6 765 45.5
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 1.8e-161 573.9 760 46.1
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 8.8e-161 571.6 760 45.5
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 4.4e-160 569.3 760 45.9
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 1.3e-159 567.8 733 44.5
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 3.7e-159 566.2 761 45.1
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 1.6e-157 560.8 669 50.5
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 7.7e-157 558.5 766 45.4
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.0e-156 558.1 762 44.9
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 1.7e-156 557.4 771 44.7
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 1.2e-154 551.2 769 44.6
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 4.0e-153 546.2 795 44.2
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 2.0e-152 543.9 756 44.6
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 2.4e-150 537.0 688 45.2
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 7.0e-150 535.4 710 45.6
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 3.5e-149 533.1 750 43.2
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 7.0e-142 508.8 545 53.2
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 1.6e-141 507.7 755 41.5
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 1.8e-137 494.2 742 41.4
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 4.0e-137 493.0 739 41.0
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 3.2e-134 483.4 762 40.7
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 6.2e-130 469.2 665 41.5
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 6.2e-130 469.2 767 40.7
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 8.1e-130 468.8 697 42.2
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 3.1e-129 466.8 737 41.9
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 4.0e-129 466.5 693 42.6
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 2.9e-127 460.3 750 39.9
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 2.4e-126 457.2 756 39.6
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 7.8e-125 452.2 761 41.1
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 5.1e-124 449.5 764 39.8
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 5.1e-124 449.5 757 39.6
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 8.6e-124 448.7 757 39.5
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 1.1e-121 441.8 691 41.5
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 2.4e-121 440.7 690 41.7
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 7.6e-120 435.6 758 39.2
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 1.0e-116 425.2 688 41.3
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 1.3e-116 424.9 684 41.5
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 7.3e-115 419.1 712 39.7
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 3.6e-114 416.8 748 38.5
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 1.7e-111 407.9 697 39.7
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 4.9e-111 406.4 475 49.3
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 1.4e-110 404.8 689 39.8
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 2.1e-109 401.0 640 42.8
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 2.5e-107 394.0 688 38.4
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 2.1e-106 391.0 606 41.1
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 3.8e-103 380.2 478 48.3
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 1.9e-102 377.9 667 38.7
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 2.7e-101 374.0 752 35.4
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 4.6e-101 373.2 698 36.7
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 4.0e-97 360.1 741 35.8
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 2.2e-95 354.4 649 38.2
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 3.2e-94 350.5 759 34.5
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 4.2e-94 350.1 776 34.4
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 1.6e-93 348.2 768 35.0
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 2.3e-92 344.4 804 33.5
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 8.7e-92 342.4 692 36.4
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 1.5e-91 341.7 702 36.2
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 1.6e-90 338.2 739 35.0
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 3.7e-90 337.0 771 34.0
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 8.2e-90 335.9 509 40.9
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 1.8e-89 334.7 691 34.4
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 4.1e-89 333.6 702 35.8
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 6.9e-89 332.8 612 37.4
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 7.2e-86 322.8 765 34.5
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 9.3e-86 322.4 765 34.4
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 8.7e-84 315.8 741 34.3
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 1.9e-83 314.7 695 34.4
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 5.7e-83 313.2 776 32.9
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 2.8e-82 310.8 707 34.9
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 1.1e-81 308.9 531 39.4
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 5.3e-81 306.6 532 39.3
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 2.6e-80 304.3 532 39.3
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 2.9e-79 300.8 707 33.1
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 5.1e-76 290.0 578 37.5
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 6.3e-74 283.1 737 31.6
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 3.1e-73 280.8 366 46.4
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 2.2e-71 274.6 764 32.9
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 7.9e-69 266.2 752 31.8
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 1.4e-65 255.4 672 32.0
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 1.0e-63 249.2 687 32.0
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 6.5e-63 246.5 749 30.4
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 9.7e-59 232.6 763 28.7
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 1.0e-55 222.6 538 32.7
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 1.7e-47 195.3 416 36.5
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 1.4e-36 159.1 703 24.8
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 3.5e-32 144.4 96 70.8
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 6.6e-31 140.2 297 38.0
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 1.5e-30 139.0 748 25.4
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 7.3e-30 136.7 132 54.5
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 1.2e-29 136.0 267 38.2
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 1.7e-26 125.6 141 50.4
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 2.3e-23 115.2 149 43.6
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 1.8e-20 105.5 133 45.9
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 3.1e-20 104.8 551 23.8
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 1.5e-19 102.4 568 25.7
Prupe.8G015600 Prunus persica HOM05D025481 ORTHO05D007911 1.1e-14 86.3 239 28.9
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 4.3e-14 84.3 169 37.3
QL04p083741 Quercus lobata HOM05D006728 ORTHO05D007911 2.1e-13 82.0 73 67.1
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 5.8e-11 73.9 72 48.6
SEGI_13134 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 6.6e-07 60.5 280 26.8
RcHm_v2.0_Chr5g0040361 Rosa chinensis HOM05D006728 ORTHO05D007911 4.3e-06 57.8 100 39.0


User provided reference genes

Program Settings