Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 1.1e-64 250.0 143 100.0
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 6.1e-63 244.2 143 87.4
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 3.9e-62 241.5 143 97.2
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 3.8e-49 198.4 143 85.3
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 6.5e-49 197.6 143 85.3
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 3.4e-45 185.3 143 69.9
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 5.7e-45 184.5 119 80.7
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 4.8e-44 181.4 99 92.9
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 4.1e-43 178.3 144 67.4
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 4.1e-43 178.3 144 67.4
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 5.4e-43 177.9 145 69.7
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 5.4e-43 177.9 144 67.4
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 1.6e-42 176.4 143 76.2
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 2.7e-42 175.6 143 76.2
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 3.5e-42 175.3 144 66.7
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 5.9e-42 174.5 147 68.0
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 7.7e-42 174.1 139 80.6
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.7e-41 172.9 143 75.5
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 2.9e-41 172.2 144 74.3
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 6.5e-41 171.0 144 75.7
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 1.1e-40 170.2 144 75.0
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 1.9e-40 169.5 139 74.1
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 2.5e-40 169.1 141 64.5
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 3.3e-40 168.7 140 77.1
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 5.5e-40 167.9 141 75.9
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 5.5e-40 167.9 141 75.2
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 5.5e-40 167.9 143 73.4
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 7.2e-40 167.5 143 75.5
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 1.2e-39 166.8 143 62.2
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 1.2e-39 166.8 143 72.0
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 1.2e-39 166.8 139 76.3
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 1.6e-39 166.4 144 74.3
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 1.6e-39 166.4 139 74.8
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 1.6e-39 166.4 144 72.9
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 2.8e-39 165.6 140 75.7
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 3.6e-39 165.2 143 63.6
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 3.6e-39 165.2 143 63.6
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 4.7e-39 164.9 143 74.1
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 4.7e-39 164.9 143 62.2
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 6.1e-39 164.5 140 73.6
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 8.0e-39 164.1 143 62.9
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 1.4e-38 163.3 143 62.2
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 3.0e-38 162.2 141 63.1
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 3.0e-38 162.2 140 72.9
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 3.0e-38 162.2 139 73.4
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 6.8e-38 161.0 140 72.1
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 6.8e-38 161.0 144 70.8
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 6.8e-38 161.0 140 72.1
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 8.9e-38 160.6 137 73.7
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 8.9e-38 160.6 139 72.7
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 8.9e-38 160.6 140 75.7
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 8.9e-38 160.6 140 61.4
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 1.2e-37 160.2 140 72.9
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 3.4e-37 158.7 139 61.9
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 3.4e-37 158.7 139 61.9
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 4.4e-37 158.3 143 72.0
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 5.7e-37 157.9 139 60.4
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 5.7e-37 157.9 139 60.4
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 7.5e-37 157.5 139 60.4
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 7.5e-37 157.5 140 71.4
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 7.5e-37 157.5 140 60.0
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 9.8e-37 157.1 138 62.3
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 9.8e-37 157.1 142 61.3
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 9.8e-37 157.1 142 61.3
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 9.8e-37 157.1 140 71.4
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 1.7e-36 156.4 140 70.7
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 1.7e-36 156.4 139 72.7
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 3.7e-36 155.2 140 62.9
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 3.7e-36 155.2 139 71.2
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 4.9e-36 154.8 139 66.2
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 6.3e-36 154.5 137 71.5
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 6.3e-36 154.5 140 61.4
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 8.3e-36 154.1 139 71.2
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 1.1e-35 153.7 140 60.7
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 1.8e-35 152.9 139 70.5
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 2.4e-35 152.5 144 70.8
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 2.4e-35 152.5 139 71.9
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 4.1e-35 151.8 140 71.4
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 4.1e-35 151.8 139 59.7
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 7.0e-35 151.0 139 72.7
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 1.6e-34 149.8 141 56.7
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 2.0e-34 149.4 143 58.7
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 3.5e-34 148.7 140 70.0
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 5.9e-34 147.9 138 62.3
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 1.3e-33 146.7 139 57.6
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 1.7e-33 146.4 139 69.1
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 1.7e-33 146.4 140 71.4
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 1.7e-33 146.4 140 56.4
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 2.9e-33 145.6 115 72.2
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 1.7e-28 129.8 143 53.1
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 3.7e-28 128.6 147 57.8
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 1.1e-27 127.1 102 80.4
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 4.1e-27 125.2 143 54.5
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 2.0e-26 122.9 143 50.3
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 3.9e-25 118.6 116 69.0
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 2.5e-24 115.9 157 46.5
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 3.1e-22 109.0 143 49.0
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 7.5e-21 104.4 116 63.8
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 3.2e-19 99.0 76 64.5
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 7.0e-19 97.8 122 58.2
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 1.7e-17 93.2 115 41.7
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 5.0e-17 91.7 138 37.7
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 1.1e-16 90.5 128 38.3
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 4.3e-16 88.6 133 45.1
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 7.3e-16 87.8 124 56.5
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 2.1e-15 86.3 73 64.4
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 2.8e-15 85.9 77 68.8
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 6.2e-15 84.7 142 35.9
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 1.5e-13 80.1 70 62.9
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 2.9e-12 75.9 93 48.4
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 3.7e-12 75.5 120 41.7
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 4.1e-11 72.0 78 56.4
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 3.5e-10 68.9 78 51.3
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 1.1e-08 63.9 82 48.8
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 7.3e-08 61.2 50 68.0
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 6.2e-07 58.2 55 52.7


User provided reference genes

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