Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p003102 Quercus lobata HOM05D000005 ORTHO05D010574 1.6e-224 782.3 373 100.0
QL09p004668 Quercus lobata HOM05D000005 ORTHO05D010574 2.1e-99 366.7 399 53.1
QL05p082212 Quercus lobata HOM05D000005 ORTHO05D010574 6.7e-69 265.4 384 43.5
QL09p003267 Quercus lobata HOM05D000005 ORTHO05D010574 2.0e-65 253.8 357 45.4
QL09p003167 Quercus lobata HOM05D000005 ORTHO05D010574 7.9e-62 241.9 253 51.4
QL09p004694 Quercus lobata HOM05D000005 ORTHO05D010574 2.2e-48 197.2 361 37.4
QL04p027112 Quercus lobata HOM05D000005 ORTHO05D010574 5.1e-45 186.0 382 34.8
QL04p027472 Quercus lobata HOM05D000005 ORTHO05D010574 9.7e-44 181.8 382 34.6
QL04p027965 Quercus lobata HOM05D000005 ORTHO05D010574 8.5e-40 168.7 279 38.0
Cfa008053 Carpinus fangiana HOM05D000005 ORTHO05D010574 8.8e-37 158.7 222 46.4
Haze_17828 Corylus avellana HOM05D000005 ORTHO05D010574 2.6e-36 157.1 225 43.6
Cfa018270 Carpinus fangiana HOM05D000005 ORTHO05D010574 5.7e-36 156.0 225 45.3
Haze_17817 Corylus avellana HOM05D000005 ORTHO05D010574 7.4e-36 155.6 227 44.1
Cfa011656 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.3e-35 154.8 228 42.5
Haze_17813 Corylus avellana HOM05D000005 ORTHO05D010574 6.3e-35 152.5 225 44.4
Cfa011655 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.4e-34 150.6 240 42.1
Cfa018268 Carpinus fangiana HOM05D000005 ORTHO05D010574 9.1e-34 148.7 223 42.2
QL03p068834 Quercus lobata HOM05D000005 ORTHO05D010574 2.0e-33 147.5 157 50.3
Cfa011658 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.0e-32 145.2 231 42.0
Haze_24261 Corylus avellana HOM05D000005 ORTHO05D010574 1.9e-31 141.0 227 40.5
Haze_17730 Corylus avellana HOM05D000005 ORTHO05D010574 2.1e-30 137.5 242 40.1
Cfa018269 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.3e-29 134.0 154 46.8
Haze_17819 Corylus avellana HOM05D000005 ORTHO05D010574 1.3e-27 128.3 228 38.6
Haze_17731 Corylus avellana HOM05D000005 ORTHO05D010574 7.0e-26 122.5 163 42.9
QL05p082235 Quercus lobata HOM05D054300 ORTHO05D010574 1.7e-24 117.9 117 64.1
Prupe.7G065400 Prunus persica HOM05D000005 ORTHO05D000012 3.8e-24 116.7 163 41.1
MD12G1068700 Malus domestica HOM05D000005 ORTHO05D010574 4.7e-22 109.8 220 36.4
Haze_17818 Corylus avellana HOM05D000005 ORTHO05D010574 8.0e-22 109.0 191 35.1
Cfa011657 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.8e-21 107.8 232 34.5
RcHm_v2.0_Chr6g0251641 Rosa chinensis HOM05D000005 ORTHO05D000012 3.0e-21 107.1 161 39.8
RcHm_v2.0_Chr1g0317981 Rosa chinensis HOM05D000005 ORTHO05D010574 4.0e-21 106.7 200 37.5
QL04p027745 Quercus lobata HOM05D000005 ORTHO05D010574 6.7e-21 105.9 196 33.7
CANSAT01G0874 Cannabis sativa HOM05D000005 ORTHO05D000012 1.2e-20 105.1 286 27.6
CiPaw.16G076400 Carya illinoinensis HOM05D000005 ORTHO05D010574 1.2e-20 105.1 162 40.1
RcHm_v2.0_Chr4g0429711 Rosa chinensis HOM05D000005 ORTHO05D010574 1.5e-20 104.8 228 38.2
QL04p027198 Quercus lobata HOM05D000005 ORTHO05D010574 4.4e-20 103.2 157 34.4
Cfa012834 Carpinus fangiana HOM05D000005 ORTHO05D010574 7.5e-20 102.4 157 42.0
QL03p009455 Quercus lobata HOM05D054300 ORTHO05D010574 1.1e-18 98.6 114 58.8
RcHm_v2.0_Chr6g0251631 Rosa chinensis HOM05D000005 ORTHO05D012233 2.4e-18 97.4 157 38.9
FAN06G4743 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.0e-16 89.7 172 31.4
MD05G1002200 Malus domestica HOM05D000005 ORTHO05D010574 2.5e-15 87.4 153 32.0
FAN23G1303 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.2e-15 86.7 194 33.5
QL04p027395 Quercus lobata HOM05D000083 ORTHO05D001732 4.2e-15 86.7 179 31.3
FvH4_1g16620 Fragaria vesca HOM05D000005 ORTHO05D012233 7.2e-15 85.9 195 33.3
Cfa018271 Carpinus fangiana HOM05D000005 ORTHO05D010574 9.4e-15 85.5 146 36.3
FAN19G0622 Fragaria x ananassa HOM05D000005 ORTHO05D012233 6.1e-14 82.8 195 32.8
CANSAT78G1597 Cannabis sativa HOM05D000005 ORTHO05D010574 8.0e-14 82.4 207 28.0
RcHm_v2.0_Chr2g0106541 Rosa chinensis HOM05D000005 ORTHO05D012233 8.0e-14 82.4 177 32.8
Sed0009572 Sechium edule HOM05D000005 ORTHO05D014598 1.4e-13 81.6 154 31.8
FAN23G0394 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.8e-13 81.3 205 30.7
FAN26G1463 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.0e-13 80.5 188 31.9
FAN26G2122 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.0e-13 80.5 188 31.9
ClCG08G001360 Citrullus lanatus HOM05D000005 ORTHO05D010574 5.2e-13 79.7 152 29.6
MELO3C022148.2 Cucumis melo HOM05D000005 ORTHO05D014598 1.5e-12 78.2 154 29.9
FAN19G0289 Fragaria x ananassa HOM05D000005 ORTHO05D012233 7.5e-12 75.9 190 31.1
QL04p026662 Quercus lobata HOM05D000005 ORTHO05D000012 7.5e-12 75.9 158 28.5
QL04p027378 Quercus lobata HOM05D000005 ORTHO05D000012 7.5e-12 75.9 158 28.5
RcHm_v2.0_Chr2g0124621 Rosa chinensis HOM05D000005 ORTHO05D012233 2.2e-11 74.3 192 30.7
FAN28G2233 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.8e-11 73.2 189 30.7
RcHm_v2.0_Chr1g0342551 Rosa chinensis HOM05D000005 ORTHO05D010574 1.8e-10 71.2 209 26.8
Prupe.8G005400 Prunus persica HOM05D000005 ORTHO05D000012 3.1e-10 70.5 155 25.8
RcHm_v2.0_Chr4g0429701 Rosa chinensis HOM05D000005 ORTHO05D000012 4.1e-10 70.1 264 23.9
FAN19G2490 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.4e-10 69.7 145 32.4
Cfa018274 Carpinus fangiana HOM05D000005 ORTHO05D010574 7.0e-10 69.3 98 44.9
FvH4_1g22390 Fragaria vesca HOM05D000005 ORTHO05D000294 1.2e-09 68.6 143 32.9
FAN28G1466 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.2e-09 68.6 171 31.0
QL04p027067 Quercus lobata HOM05D000083 ORTHO05D001732 1.6e-09 68.2 108 37.0
RcHm_v2.0_Chr7g0240641 Rosa chinensis HOM05D000005 ORTHO05D012870 1.6e-09 68.2 157 28.7
QL04p027572 Quercus lobata HOM05D000056 ORTHO05D000019 2.0e-09 67.8 187 29.9
QL04p027246 Quercus lobata HOM05D000005 ORTHO05D000012 2.7e-09 67.4 166 28.9
RcHm_v2.0_Chr1g0322961 Rosa chinensis HOM05D000005 ORTHO05D000012 2.7e-09 67.4 172 29.7
QL04p027735 Quercus lobata HOM05D000005 ORTHO05D000012 3.5e-09 67.0 158 27.8
QL03p063704 Quercus lobata HOM05D000005 ORTHO05D010574 7.7e-09 65.9 197 26.9
ClCG08G001330 Citrullus lanatus HOM05D000005 ORTHO05D010574 1.3e-08 65.1 160 25.6
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 5.0e-08 63.2 163 31.9
Duzib268G0652 Durio zibethinus HOM05D000005 ORTHO05D000012 8.6e-08 62.4 165 26.7
Gohir.D11G313100 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.6e-08 62.4 168 30.4
QL04p028099 Quercus lobata HOM05D000005 ORTHO05D010574 8.6e-08 62.4 153 24.2
RcHm_v2.0_Chr1g0323501 Rosa chinensis HOM05D000005 ORTHO05D001748 8.6e-08 62.4 172 28.5
MD17G1192900 Malus domestica HOM05D000005 ORTHO05D000012 2.5e-07 60.8 154 25.3
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 3.3e-07 60.5 163 29.4
FAN15G3532 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.2e-07 60.1 144 30.6
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-07 60.1 172 29.1
Sed0004955 Sechium edule HOM05D000005 ORTHO05D019022 4.2e-07 60.1 165 27.3
CsaV3_5G039740 Cucumis sativus L. HOM05D000005 ORTHO05D014598 5.5e-07 59.7 176 26.1
QL04p027557 Quercus lobata HOM05D000005 ORTHO05D000012 5.5e-07 59.7 167 26.9
Sed0026698 Sechium edule HOM05D000005 ORTHO05D019022 5.5e-07 59.7 150 28.7
Sed0011506 Sechium edule HOM05D000005 ORTHO05D019022 7.2e-07 59.3 166 27.7
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 9.5e-07 58.9 226 28.8
RcHm_v2.0_Chr1g0319431 Rosa chinensis HOM05D000005 ORTHO05D001748 9.5e-07 58.9 170 27.1
RcHm_v2.0_Chr1g0321301 Rosa chinensis HOM05D000005 ORTHO05D001748 9.5e-07 58.9 178 28.1
FvH4_5g38760 Fragaria vesca HOM05D000005 ORTHO05D012870 1.2e-06 58.5 165 23.6
FAN28G0065 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.2e-06 58.5 189 27.0
Gohir.A11G298075 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.6e-06 58.2 219 25.6
Thecc.06G062100 Theobroma cacao HOM05D000005 ORTHO05D000012 1.6e-06 58.2 92 33.7
QL09p000751 Quercus lobata HOM05D000005 ORTHO05D000012 2.1e-06 57.8 205 30.7
RcHm_v2.0_Chr1g0322781 Rosa chinensis HOM05D000005 ORTHO05D000012 2.1e-06 57.8 167 29.3
RcHm_v2.0_Chr1g0323411 Rosa chinensis HOM05D000005 ORTHO05D001748 2.1e-06 57.8 163 28.8
RcHm_v2.0_Chr5g0055671 Rosa chinensis HOM05D000005 ORTHO05D000012 2.1e-06 57.8 207 28.0
Duzib268G0170 Durio zibethinus HOM05D000005 ORTHO05D000012 2.8e-06 57.4 187 28.9
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 2.8e-06 57.4 172 29.1
RcHm_v2.0_Chr6g0250551 Rosa chinensis HOM05D000005 ORTHO05D000012 2.8e-06 57.4 169 28.4
MD05G1002400 Malus domestica HOM05D000005 ORTHO05D012870 3.6e-06 57.0 157 26.8
Prupe.8G005200 Prunus persica HOM05D000005 ORTHO05D000012 3.6e-06 57.0 161 28.6
QL09p000646 Quercus lobata HOM05D000005 ORTHO05D000012 3.6e-06 57.0 181 30.4
Sed0017103 Sechium edule HOM05D000005 ORTHO05D019022 3.6e-06 57.0 207 27.5
Prupe.7G065500 Prunus persica HOM05D000005 ORTHO05D010574 4.7e-06 56.6 155 31.0
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 4.7e-06 56.6 172 28.5
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 4.7e-06 56.6 207 27.1
FvH4_1g16621 Fragaria vesca HOM05D000005 ORTHO05D012233 8.0e-06 55.8 95 37.9
QL09p004329 Quercus lobata HOM05D000254 ORTHO05D000165 8.0e-06 55.8 171 31.0


User provided reference genes

Program Settings