Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 2.2e-38 161.8 80 100.0
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 5.3e-24 114.0 95 65.3
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 1.5e-23 112.5 70 81.4
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 2.0e-23 112.1 70 80.0
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.0e-23 112.1 70 80.0
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.0e-23 112.1 70 80.0
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.0e-23 112.1 70 80.0
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 2.0e-23 112.1 70 81.4
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 4.5e-23 110.9 69 81.2
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 4.5e-23 110.9 69 81.2
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.0e-22 109.8 70 77.1
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.0e-22 109.8 70 77.1
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 1.0e-22 109.8 70 77.1
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 1.3e-22 109.4 70 77.1
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 1.3e-22 109.4 70 77.1
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 1.3e-22 109.4 70 77.1
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 1.3e-22 109.4 70 77.1
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 2.2e-22 108.6 70 75.7
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 2.9e-22 108.2 70 77.1
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 3.8e-22 107.8 70 75.7
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 5.0e-22 107.5 70 75.7
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 5.0e-22 107.5 70 75.7
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 6.5e-22 107.1 70 74.3
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 6.5e-22 107.1 70 74.3
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 8.5e-22 106.7 70 74.3
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 1.4e-21 105.9 68 79.4
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 1.4e-21 105.9 70 75.7
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 1.9e-21 105.5 70 72.9
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 1.9e-21 105.5 70 72.9
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 3.2e-21 104.8 70 74.3
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 3.2e-21 104.8 69 73.9
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 4.2e-21 104.4 70 71.4
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 7.2e-21 103.6 70 71.4
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 7.9e-20 100.1 70 72.9
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 7.9e-20 100.1 70 71.4
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 1.0e-19 99.8 70 70.0
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 1.0e-19 99.8 70 72.9
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 1.8e-19 99.0 70 68.6
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 1.8e-19 99.0 70 68.6
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 4.4e-18 94.4 68 75.0
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 7.4e-18 93.6 70 67.1
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 7.4e-18 93.6 65 67.7
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 2.8e-17 91.7 69 63.8
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 6.3e-17 90.5 70 67.1
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 5.3e-16 87.4 70 64.3
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 9.1e-16 86.7 70 65.7
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 1.0e-14 83.2 70 65.7
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 1.7e-14 82.4 70 61.4
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.9e-14 81.6 60 66.7
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 3.8e-14 81.3 70 62.9
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 5.0e-14 80.9 70 60.0
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 5.0e-14 80.9 70 61.4
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 6.5e-14 80.5 69 62.3
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 8.5e-14 80.1 70 60.0
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 8.5e-14 80.1 70 60.0
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 8.5e-14 80.1 70 61.4
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 1.1e-13 79.7 70 60.0
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 1.1e-13 79.7 70 61.4
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 1.9e-13 79.0 70 58.6
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 2.5e-13 78.6 40 92.5
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 2.5e-13 78.6 70 57.1
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 3.2e-13 78.2 70 58.6
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 3.2e-13 78.2 70 58.6
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 5.5e-13 77.4 70 58.6
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 5.5e-13 77.4 70 57.1
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 5.5e-13 77.4 70 57.1
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 5.5e-13 77.4 70 58.6
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 7.2e-13 77.0 70 57.1
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 7.2e-13 77.0 70 57.1
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 1.2e-12 76.3 39 92.3
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 1.2e-12 76.3 70 48.6
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 1.2e-12 76.3 70 58.6
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 1.6e-12 75.9 71 56.3
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 1.6e-12 75.9 70 58.6
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 2.1e-12 75.5 70 55.7
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 2.1e-12 75.5 70 55.7
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.7e-12 75.1 70 55.7
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.7e-12 75.1 70 55.7
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 2.7e-12 75.1 70 57.1
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 4.7e-12 74.3 70 58.6
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 4.7e-12 74.3 69 59.4
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 6.1e-12 73.9 70 55.7
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 6.1e-12 73.9 70 54.3
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 1.0e-11 73.2 70 55.7
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 1.0e-11 73.2 70 55.7
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 1.4e-11 72.8 70 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 1.8e-11 72.4 65 49.2
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 1.8e-11 72.4 70 52.9
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 1.8e-11 72.4 71 53.5
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 2.3e-11 72.0 70 47.1
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 3.0e-11 71.6 70 47.1
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 4.0e-11 71.2 70 55.7
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 8.8e-11 70.1 70 54.3
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 8.8e-11 70.1 70 54.3
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.0e-10 68.9 70 54.3
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 2.0e-10 68.9 70 52.9
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 2.0e-10 68.9 70 52.9
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 2.6e-10 68.6 70 54.3
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 3.3e-10 68.2 70 52.9
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 4.4e-10 67.8 71 52.1
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 4.4e-10 67.8 71 52.1
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 1.3e-09 66.2 39 71.8
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.8e-08 62.4 71 50.7
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 1.8e-08 62.4 32 90.6
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 2.7e-07 58.5 69 44.9
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 4.5e-07 57.8 46 60.9
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 6.5e-06 53.9 70 40.0


User provided reference genes

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