Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 1.2e-175 619.8 312 100.0
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 8.6e-163 577.0 290 99.7
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 5.3e-144 514.6 289 85.8
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 9.0e-144 513.8 290 85.2
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.2e-143 513.5 290 84.8
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.0e-143 512.7 300 85.0
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 9.9e-143 510.4 290 84.8
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.3e-142 510.0 290 84.5
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 4.9e-142 508.1 288 85.4
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 8.4e-142 507.3 291 84.5
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 7.1e-141 504.2 288 83.7
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 9.3e-141 503.8 292 84.6
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.2e-140 503.4 290 84.1
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 1.6e-140 503.1 288 84.7
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 2.1e-140 502.7 287 85.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 3.5e-140 501.9 290 82.8
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 4.6e-140 501.5 287 84.7
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.6e-140 501.5 293 82.9
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.0e-139 500.4 290 82.8
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 1.8e-139 499.6 290 83.1
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.8e-139 499.6 289 82.0
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.8e-139 499.6 289 84.4
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 3.0e-139 498.8 317 77.6
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 1.9e-138 496.1 288 81.9
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 2.5e-138 495.7 288 83.0
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.3e-138 495.4 288 81.9
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.3e-138 495.0 292 83.2
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 5.6e-138 494.6 343 73.8
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 7.4e-138 494.2 287 83.3
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 9.6e-138 493.8 288 84.0
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 9.6e-138 493.8 287 81.9
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 1.3e-137 493.4 288 83.0
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 2.1e-137 492.7 290 83.4
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.8e-137 492.3 288 80.6
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 3.7e-137 491.9 290 81.4
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 3.7e-137 491.9 289 81.7
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 4.8e-137 491.5 288 80.6
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.1e-136 490.3 287 82.9
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.1e-136 490.3 288 83.3
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.8e-136 489.6 288 83.3
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 1.8e-136 489.6 288 83.3
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.8e-136 489.6 288 80.2
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 2.4e-136 489.2 288 83.0
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 9.0e-136 487.3 288 82.3
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 9.0e-136 487.3 291 82.5
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.2e-135 486.9 290 81.7
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.2e-135 486.9 288 79.9
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 2.0e-135 486.1 288 82.6
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 3.4e-135 485.3 287 80.1
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 4.5e-135 485.0 288 80.9
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 5.8e-135 484.6 286 79.7
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 5.8e-135 484.6 288 82.3
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.7e-134 483.0 290 80.0
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 2.2e-134 482.6 289 81.3
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.2e-134 482.6 288 78.5
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 8.4e-134 480.7 288 82.6
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.9e-133 479.6 290 79.7
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 2.5e-133 479.2 321 74.1
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 2.5e-133 479.2 311 76.2
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 7.1e-133 477.6 287 80.5
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.6e-132 476.5 289 78.5
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 2.1e-132 476.1 294 80.3
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 4.6e-132 474.9 290 79.7
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 5.1e-131 471.5 300 79.3
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 6.7e-131 471.1 290 78.6
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.1e-130 470.3 288 79.9
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 3.7e-129 465.3 288 78.1
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.7e-129 465.3 287 78.0
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 5.3e-128 461.5 337 69.4
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 5.3e-128 461.5 337 69.4
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.2e-127 460.3 291 77.0
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 4.5e-127 458.4 293 76.1
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 7.6e-127 457.6 287 77.4
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.0e-126 457.2 292 78.1
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.7e-126 456.4 310 76.1
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 3.8e-126 455.3 288 78.8
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 5.0e-126 454.9 291 75.3
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 1.9e-125 453.0 291 75.3
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.9e-125 453.0 289 77.5
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 4.6e-124 448.4 253 84.6
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 3.1e-120 435.6 313 71.6
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 9.0e-120 434.1 340 67.1
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.3e-118 430.3 307 71.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 2.7e-116 422.5 257 79.0
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.1e-114 417.2 253 79.8
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.3e-114 415.6 277 71.8
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.2e-113 412.9 259 78.0
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 2.7e-108 396.0 293 67.6
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 3.0e-107 392.5 254 74.8
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.7e-105 386.7 267 72.7
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.1e-104 382.1 236 78.0
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 9.1e-104 380.9 270 72.6
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.6e-103 380.2 293 64.2
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 9.4e-101 370.9 223 81.6
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 2.6e-98 362.8 288 60.4
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.7e-94 350.1 261 69.7
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.1e-93 347.4 209 80.4
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 9.4e-93 344.4 272 65.1
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.1e-92 343.2 252 70.6
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.6e-92 342.4 291 58.8
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 3.0e-91 339.3 202 79.7
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 1.5e-90 337.0 202 80.2
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 2.0e-87 326.6 201 75.6
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 5.5e-85 318.5 311 55.9
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 9.5e-85 317.8 196 80.1
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.6e-84 317.0 200 77.0
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.4e-80 303.9 272 59.2
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.8e-80 303.5 352 49.7
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.6e-68 263.8 206 63.1
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 7.5e-66 255.0 152 78.9
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.2e-58 231.1 286 45.5
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 1.3e-57 227.6 132 83.3
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 6.0e-55 218.8 244 51.2
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 2.5e-53 213.4 133 76.7
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 6.2e-52 208.8 120 79.2
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 4.4e-50 202.6 119 84.0
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.9e-48 197.2 138 68.1
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.6e-47 194.1 198 54.5
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 4.6e-47 192.6 126 77.8
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 4.6e-47 192.6 126 77.8
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 7.8e-47 191.8 120 75.0
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 3.6e-44 183.0 309 35.9
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 4.7e-44 182.6 122 75.4
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.3e-41 174.5 162 59.9
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.3e-41 174.5 124 65.3
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 3.2e-40 169.9 157 64.3
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 4.8e-36 156.0 89 85.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 6.4e-25 119.0 116 55.2
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 4.0e-19 99.8 52 86.5
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.3e-17 94.7 61 73.8
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 3.2e-16 90.1 81 59.3
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.1e-13 81.6 55 70.9
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 3.3e-13 80.1 40 87.5
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 4.3e-13 79.7 110 42.7
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 7.4e-13 79.0 57 64.9
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 5.9e-10 69.3 38 81.6
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 8.5e-09 65.5 140 34.3
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 4.6e-07 59.7 42 69.0
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 1.3e-06 58.2 115 33.9
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 8.7e-06 55.5 39 71.8


User provided reference genes

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